Index

_

__abstractmethods__ (AbsoluteEnergy attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AdvancedManufacturing attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGap attribute) (BandGapParameters attribute) (BulkModuli attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinTox attribute) (ClinToxParameters attribute) (ConditionalGenerator attribute) (DiffusersGenerationAlgorithm attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergy attribute) (FermiEnergyParameters attribute) (FormationEnergy attribute) (FormationEnergyParameters attribute) (GeneratorAlgorithm attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (GuacaMolGenerator attribute) (HuggingFaceGenerationAlgorithm attribute) (IpAdressParameters attribute) (KeywordBERTGenerationAlgorithm attribute) (MCAParameters attribute) (MetalNonMetalClassifier attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifier attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeR attribute) (MolformerClassification attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassification attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegression attribute) (MolformerRegressionParameters attribute) (MolGX attribute) (MosesGenerator attribute) (OrganTox attribute) (OrganToxParameters attribute) (PaccMann attribute) (PaccMannGP attribute) (PaccMannRL attribute) (PaccMannVAE attribute) (PGT attribute) (PhConfiguration attribute) (PoissonRatio attribute) (PoissonRatioParameters attribute) (PolymerBlocks attribute) (PredictorAlgorithm attribute) (PropertyPredictor attribute) (PropertyPredictorParameters attribute) (ProteinSequenceConditionalGenerator attribute) (RegressionTransformer attribute) (Reinvent attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuli attribute) (ShearModuliParameters attribute) (Sider attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Template attribute) (TopicsZeroShot attribute) (TorchDrugGenerator attribute) (Tox21 attribute) (Tox21Parameters attribute) (TranscriptomicConditionalGenerator attribute) __annotations__ (AaeGenerator attribute) (AbsoluteEnergy attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTarget attribute) (ActivityAgainstTargetParameters attribute) (AdvancedManufacturing attribute) (AffinityPredictor attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (AliphaticIndex attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (AnnotationTuple attribute) (ApiTokenParameters attribute) (ApplicationsRegistry attribute) (ArgumentParser attribute) (Aromaticity attribute) (Askcos attribute) (AskcosParameters attribute) (AskcosParameters.Output attribute) (AtomCustomJSONInitializer attribute) (AutoEncoderDataset attribute) (BandGap attribute) (BandGapParameters attribute) (BasicSelfiesTokenizer attribute) (BasicSmilesTokenizer attribute) (Bertz attribute) (BesselBasisLayer attribute) (BigSmilesTokenizer attribute) (BimodalMCAAffinityPredictor attribute) (BomanIndex attribute) (BulkModuli attribute) (BulkModuliParameters attribute) (CallablePropertyPredictor attribute) (CatalystBindingEnergyPredictor attribute) (CatalystGenerator attribute), [1] (CatalystVAE attribute) (CFConv attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNParameters attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (Charge attribute) (ChargeDensity attribute) (ChemicalLanguageRT attribute) (CIFData attribute) (ClinTox attribute) (ClinToxParameters attribute) (CoherenceCheckGenerator attribute) (CombinedGranularDataset attribute) (ConditionalGenerator attribute), [1] (ConfigurableCallablePropertyPredictor attribute) (ConfigurablePropertyAlgorithmConfiguration attribute) (ConfigurationTuple attribute) (ConvBottleneck attribute) (ConvLayer attribute) (CrystalGraphConvNet attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (CrystalsRFCTrainingPipeline attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DeconvBottleneck attribute) (DiffusersConfiguration attribute) (DiffusersGenerationAlgorithm attribute) (DiffusionDataArguments attribute) (DiffusionForVisionTrainingPipeline attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (DistanceScorer attribute) (Docking attribute) (DockingParameters attribute) (DockingTdc attribute) (DockingTdcParameters attribute) (DomainSubmodule attribute) (EditGenerator attribute) (Embeddings attribute) (Envelope attribute) (Esol attribute) (FermiEnergy attribute) (FermiEnergyParameters attribute) (FormationEnergy attribute) (FormationEnergyParameters attribute) (GAFGenerator attribute) (GCPNGenerator attribute) (Generator attribute) (GeneratorAlgorithm attribute) (GenericTokenizer attribute) (GeoDiffGenerator attribute) (GFlowNetDataArguments attribute) (GFlowNetDataModule attribute) (GFlowNetDataset attribute) (GFlowNetModelArguments attribute) (GFlowNetModule attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GINEConv attribute) (GINEncoder attribute) (Global_MP attribute) (GranularBaseModel attribute) (GranularDataArguments attribute) (GranularDataModule attribute) (GranularDataset attribute) (GranularEncoderDecoderModel attribute) (GranularModelArguments attribute) (GranularModule attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GranularTrainingPipeline attribute) (GraphBuildingEnvContext attribute) (GraphGAGenerator attribute) (GraphGAIterator attribute) (GraphMCTSGenerator attribute) (GraphMCTSIterator attribute) (GraphTransformer attribute) (GraphTransformerGFN attribute) (GT4SDArtifactManagementConfiguration attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (GuacaMolAbstractGenerator attribute) (GuacaMolBaselinesTrainingPipeline attribute) (GuacaMolDataArguments attribute) (GuacaMolGenerator attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolLSTMTrainingPipeline attribute) (GuacaMolSavingArguments attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGenerationAlgorithm attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (HydrophobicRatio attribute) (InferenceArguments attribute) (Instability attribute) (InteractionBlock attribute) (IpAdressParameters attribute) (IsoelectricPoint attribute) (IsomerScorer attribute) (IsScaffold attribute) (KeyBERTGenerator attribute) (KeywordBERTGenerationAlgorithm attribute) (LatentModelDataset attribute) (LayerNorm attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (Length attribute) (Lipinski attribute) (ListModule attribute) (Local_MP attribute) (Logp attribute) (MaeWithNans attribute) (MCAParameters attribute) (MessagePassing attribute) (MetalNonMetalClassifier attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifier attribute) (MetalSemiconductorClassifierParameters attribute) (Mlp attribute) (MlpAutoEncoder attribute) (MlpDecoder attribute) (MLPEdgeEncoder attribute) (MlpEncoder attribute) (MlpPredictor attribute) (MolBuildingEnvContext attribute) (MolecularWeight attribute), [1] (MoleculeGNN attribute) (MoleculeGNNOutput attribute) (MoleculeOne attribute) (MoleculeOneParameters attribute) (MoleculePropertyPredictorScorer attribute) (MoLeR attribute) (MoLeRDefaultGenerator attribute) (MolformerClassification attribute) (MolformerClassificationParameters attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerMultitaskClassification attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegression attribute) (MolformerRegressionParameters attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MolformerTrainingPipeline attribute) (MolGX attribute) (MolGXQM9Generator attribute) (MosesDataArguments attribute) (MosesGenerator attribute) (MosesOrganModelArguments attribute) (MosesOrganTrainingArguments attribute) (MosesOrganTrainingPipeline attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesTrainingPipeline attribute) (MosesVAEModelArguments attribute) (MosesVAETrainingArguments attribute) (MosesVAETrainingPipeline attribute) (MseWithNans attribute) (MSLELossNegMix9 attribute) (MSLELossNegMix91 attribute) (MSLELossNegMix92 attribute) (MSLELossNegMix99 attribute) (MultiHeadedAttention attribute) (MultiLayerPerceptron attribute) (MXMNet attribute) (NoEncoding attribute) (NumberAromaticRings attribute) (NumberAtoms attribute) (NumberHAcceptors attribute) (NumberHDonors attribute) (NumberHeterocycles attribute) (NumberLargeRings attribute) (NumberRings attribute) (NumberRotatableBonds attribute) (NumberStereocenters attribute) (OrganGenerator attribute) (OrganTox attribute) (OrganToxParameters attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) (PaccMann attribute) (PaccMannDataArguments attribute) (PaccMannGP attribute) (PaccMannGPGenerator attribute) (PaccMannRL attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannTrainingPipeline attribute) (PaccMannVAE attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (PaccMannVAETrainingPipeline attribute) (PartGenerator attribute) (PGT attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (Plogp attribute) (PoissonRatio attribute) (PoissonRatioParameters attribute) (PolymerBlocks attribute) (PolymerBlocksGenerator attribute) (PositionalEncoding attribute) (PositionwiseFeedForward attribute) (PredictorAlgorithm attribute) (PrimarySequenceEncoder attribute) (Property attribute) (PropertyPredictor attribute), [1] (PropertyPredictorParameters attribute) (ProteinLanguageRT attribute) (ProteinPropertyPredictorScorer attribute) (ProteinSequenceConditionalGenerator attribute) (Qed attribute) (QEDScorer attribute) (QM9Dataset attribute) (QM9GapTask attribute) (RDKitDescriptorScorer attribute) (RegistryDict attribute) (RegressionTransformer attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (RegressionTransformerTrainingPipeline attribute) (Reinvent attribute) (ReinventBase attribute) (ReinventGenerator attribute) (Representation attribute) (Res attribute) (RnnDecoder attribute) (RnnEncoder attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (SampledSequencesDTO attribute) (SampledTuple attribute) (SamplingIterator attribute) (Sas attribute) (SavingArgumentParser attribute), [1] (SavingArguments attribute), [1] (SchNetEncoder attribute) (ScoreSdeGenerator attribute) (Scscore attribute) (ScscoreConfiguration attribute) (SelfiesTokenizer attribute) (ShearModuli attribute) (ShearModuliParameters attribute) (ShiftedSoftplus attribute) (Sider attribute) (SiderParameters attribute) (SiLU attribute) (SimilaritySeed attribute) (SimilaritySeedParameters attribute) (SMARTSScorer attribute) (SMILESGAGenerator attribute) (SMILESGAIterator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMHCIterator attribute) (SMILESLSTMPPOGenerator attribute) (SMILESLSTMPPOIterator attribute) (SmilesTokenizationPreProcessingDataset attribute) (SmilesTokenizer attribute) (SphericalBasisLayer attribute) (StableDiffusionGenerator attribute) (StratifiedSampler attribute) (SublayerConnection attribute) (TanimotoScorer attribute) (TargetValueScorer attribute) (Template attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TopicsZeroShot attribute) (TorchDrugDataArguments attribute) (TorchDrugDataset attribute) (TorchDrugGCPN attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGCPNTrainingPipeline attribute) (TorchDrugGenerator attribute) (TorchDrugGraphAF attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugGraphAFTrainingPipeline attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TorchDrugTrainingPipeline attribute) (TorchLayerNorm attribute) (Tox21 attribute) (Tox21Parameters attribute) (Tpsa attribute) (TrainerArgumentParser attribute) (TrainerArguments attribute) (TrainingPipeline attribute) (TrainingPipelineArguments attribute) (TrajectoryBalanceModel attribute) (TranscriptomicConditionalGenerator attribute) (TransformerDecoder attribute) (TransformerDecoderLayer attribute) (TransformerEncoder attribute) (TransformerEncoderLayer attribute) (TransformersToSentenceTransformersArguments attribute) (TransformersTrainingArgumentsCLI attribute) (VaeGenerator attribute) (VaeMlp attribute) (VaeRnn attribute) (VaeTrans attribute) __call__() (CallablePropertyPredictor method) (CatalystBindingEnergyPredictor method) (ConfigurableCallablePropertyPredictor method) (EMA method) (GeoDiffPipeline method) (KLAnnealer method) (MPModelPlaceholder method) (PredictorAlgorithm method) (PropertyPredictor method), [1] (Scaler method) __class_vars__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __collect__() (MessagePassing method) __dataclass_fields__ (AaeGenerator attribute) (AffinityPredictor attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (CatalystGenerator attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DiffusionDataArguments attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (GeoDiffGenerator attribute) (GFlowNetDataArguments attribute) (GFlowNetModelArguments attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GranularDataArguments attribute) (GranularModelArguments attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GuacaMolDataArguments attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolSavingArguments attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (InferenceArguments attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoleculeGNNOutput attribute) (MoLeRDefaultGenerator attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MolGXQM9Generator attribute) (MosesDataArguments attribute) (MosesOrganModelArguments attribute) (MosesOrganTrainingArguments attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesVAEModelArguments attribute) (MosesVAETrainingArguments attribute) (OrganGenerator attribute) (PaccMannDataArguments attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (ReinventGenerator attribute) (Representation attribute) (SampledSequencesDTO attribute) (SavingArguments attribute), [1] (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugDataArguments attribute) (TorchDrugGCPN attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAF attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TrainerArguments attribute) (TrainingPipelineArguments attribute) (TransformersToSentenceTransformersArguments attribute) (TransformersTrainingArgumentsCLI attribute) (VaeGenerator attribute) __dataclass_params__ (AaeGenerator attribute) (AffinityPredictor attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (CatalystGenerator attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DiffusionDataArguments attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (GeoDiffGenerator attribute) (GFlowNetDataArguments attribute) (GFlowNetModelArguments attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GranularDataArguments attribute) (GranularModelArguments attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GuacaMolDataArguments attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolSavingArguments attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (InferenceArguments attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoleculeGNNOutput attribute) (MoLeRDefaultGenerator attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MolGXQM9Generator attribute) (MosesDataArguments attribute) (MosesOrganModelArguments attribute) (MosesOrganTrainingArguments attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesVAEModelArguments attribute) (MosesVAETrainingArguments attribute) (OrganGenerator attribute) (PaccMannDataArguments attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (ReinventGenerator attribute) (Representation attribute) (SampledSequencesDTO attribute) (SavingArguments attribute), [1] (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugDataArguments attribute) (TorchDrugGCPN attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAF attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TrainerArguments attribute) (TrainingPipelineArguments attribute) (TransformersToSentenceTransformersArguments attribute) (TransformersTrainingArgumentsCLI attribute) (VaeGenerator attribute) __del__() (MPModelProxy method) __dict__ (AAE attribute) (AaeIterator attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (ApplicationsRegistry attribute) (AskcosParameters attribute) (AskcosParameters.Output attribute) (AtomInitializer attribute) (AverageMeter attribute) (BandGapParameters attribute) (BasicTokenizer attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (CombinedScorer attribute) (ConditionalGenerator attribute), [1] (DockingParameters attribute) (DockingTdcParameters attribute) (DomainSubmodule attribute) (DummyDataset attribute) (EMA attribute) (Features attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GaussianDistance attribute) (GaussianProcessRepresentationsSampler attribute) (Generator attribute), [1], [2], [3], [4], [5], [6], [7] (GeneratorAlgorithm attribute) (GeoDiffPipeline attribute) (GFlowNetAlgorithm attribute) (GFlowNetTask attribute) (GPConditionalGenerator attribute) (GraphAction attribute) (GraphActionCategorical attribute) (GraphBuildingEnv attribute) (GraphBuildingEnvContext attribute) (GraphGA attribute) (GraphMCTS attribute) (GT4SDArtifactManagementConfiguration attribute) (GT4SDConfiguration attribute) (GT4SDS3Client attribute) (GT4SDTestSettings attribute) (InferenceArguments attribute) (IpAdressParameters attribute) (KeyBERT attribute) (KLAnnealer attribute) (MCAParameters attribute) (MCAPredictor attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeFormat attribute) (MoleculeOneParameters attribute) (MoLeRGenerator attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (MolGXGenerator attribute) (MPModelPlaceholder attribute) (MPModelProxy attribute) (MXMNetConfig attribute) (Normalizer attribute) (Objective attribute) (Organ attribute) (OrganIterator attribute) (OrganToxParameters attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) (PaccMannVaeDefaultGenerator attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PredictorAlgorithm attribute) (Property attribute) (PropertyPredictor attribute), [1], [2] (PropertyPredictorParameters attribute) (PropertyPredictorRegistry attribute) (RegistryDict attribute) (ReinventBase attribute) (Representation attribute) (RFC attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (SampledSequencesDTO attribute) (SavingArguments attribute), [1] (Scaler attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (SMILESGA attribute) (SMILESLSTMHC attribute) (SMILESLSTMPPO attribute) (TDLoss attribute) (Tokenizer attribute) (Tox21Parameters attribute) (TrainerArguments attribute) (TrainingPipeline attribute) (TrainingPipelineArguments attribute) (TrajectoryBalance attribute) (TransformersToSentenceTransformersArguments attribute) (VAE attribute) (VaeIterator attribute) (ZeroShotClassifier attribute) __distribute__() (MessagePassing method) __doc__ (AAE attribute) (AaeGenerator attribute) (AaeIterator attribute) (AbsoluteEnergy attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTarget attribute) (ActivityAgainstTargetParameters attribute) (AdvancedManufacturing attribute) (AffinityPredictor attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (AliphaticIndex attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (AnnotationTuple attribute) (ApiTokenParameters attribute) (ApplicationsRegistry attribute) (ArgumentParser attribute) (Aromaticity attribute) (Askcos attribute) (AskcosParameters attribute) (AskcosParameters.Output attribute) (AtomCustomJSONInitializer attribute) (AtomInitializer attribute) (AutoEncoderDataset attribute) (AverageMeter attribute) (BandGap attribute) (BandGapParameters attribute) (BasicSelfiesTokenizer attribute) (BasicSmilesTokenizer attribute) (BasicTokenizer attribute) (Bertz attribute) (BesselBasisLayer attribute) (BigSmilesTokenizer attribute) (BimodalMCAAffinityPredictor attribute) (BomanIndex attribute) (BulkModuli attribute) (BulkModuliParameters attribute) (CallablePropertyPredictor attribute) (CatalystBindingEnergyPredictor attribute) (CatalystGenerator attribute), [1] (CatalystVAE attribute) (CFConv attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNParameters attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (CGCNNTrainingPipeline attribute) (Charge attribute) (ChargeDensity attribute) (ChemicalLanguageRT attribute) (CIFData attribute) (ClinTox attribute) (ClinToxParameters attribute) (CoherenceCheckGenerator attribute) (CombinedGranularDataset attribute) (CombinedScorer attribute) (ConditionalGenerator attribute), [1] (ConfigurableCallablePropertyPredictor attribute) (ConfigurablePropertyAlgorithmConfiguration attribute) (ConfigurationTuple attribute) (ConvBottleneck attribute) (ConvLayer attribute) (CrystalGraphConvNet attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (CrystalsRFCTrainingPipeline attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DeconvBottleneck attribute) (DiffusersConfiguration attribute) (DiffusersGenerationAlgorithm attribute) (DiffusionDataArguments attribute) (DiffusionForVisionTrainingPipeline attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (DistanceScorer attribute) (Docking attribute) (DockingParameters attribute) (DockingTdc attribute) (DockingTdcParameters attribute) (DomainSubmodule attribute) (DummyDataset attribute) (DuplicateApplicationRegistration attribute) (EditGenerator attribute) (EMA attribute) (Embeddings attribute) (Envelope attribute) (Esol attribute) (Features attribute) (FermiEnergy attribute) (FermiEnergyParameters attribute) (FormationEnergy attribute) (FormationEnergyParameters attribute) (GAFGenerator attribute) (GaussianDistance attribute) (GaussianProcessRepresentationsSampler attribute) (GCPNGenerator attribute) (Generator attribute), [1], [2], [3], [4], [5], [6], [7] (GeneratorAlgorithm attribute) (GenericTokenizer attribute) (GeoDiffGenerator attribute) (GeoDiffPipeline attribute) (GFlowNetAlgorithm attribute) (GFlowNetDataArguments attribute) (GFlowNetDataModule attribute) (GFlowNetDataset attribute) (GFlowNetModelArguments attribute) (GFlowNetModule attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GFlowNetTask attribute) (GFlowNetTrainingPipeline attribute) (GINEConv attribute) (GINEncoder attribute) (Global_MP attribute) (GPConditionalGenerator attribute) (GranularBaseModel attribute) (GranularDataArguments attribute) (GranularDataModule attribute) (GranularDataset attribute) (GranularEncoderDecoderModel attribute) (GranularModelArguments attribute) (GranularModule attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GranularTrainingPipeline attribute) (Graph attribute) (GraphAction attribute) (GraphActionCategorical attribute) (GraphActionType attribute) (GraphBuildingEnv attribute) (GraphBuildingEnvContext attribute) (GraphGA attribute) (GraphGAGenerator attribute) (GraphGAIterator attribute) (GraphMCTS attribute) (GraphMCTSGenerator attribute) (GraphMCTSIterator attribute) (GraphTransformer attribute) (GraphTransformerGFN attribute) (GT4SDArtifactManagementConfiguration attribute) (GT4SDConfiguration attribute) (GT4SDS3Client attribute) (GT4SDTestSettings attribute) (GT4SDTimeoutError attribute) (GuacaMolAbstractGenerator attribute) (GuacaMolBaselinesTrainingPipeline attribute) (GuacaMolDataArguments attribute) (GuacaMolGenerator attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolLSTMTrainingPipeline attribute) (GuacaMolSavingArguments attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGenerationAlgorithm attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (HydrophobicRatio attribute) (InferenceArguments attribute) (Instability attribute) (InteractionBlock attribute) (InvalidAlgorithmConfiguration attribute) (InvalidItem attribute) (IpAdressParameters attribute) (IsoelectricPoint attribute) (IsomerScorer attribute) (IsScaffold attribute) (KeyBERT attribute) (KeyBERTGenerator attribute) (KeywordBERTGenerationAlgorithm attribute) (KLAnnealer attribute) (LatentModelDataset attribute) (LayerNorm attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (Length attribute) (Lipinski attribute) (ListModule attribute) (Local_MP attribute) (Logp attribute) (MaeWithNans attribute) (MCAParameters attribute) (MCAPredictor attribute) (MessagePassing attribute) (MetalNonMetalClassifier attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifier attribute) (MetalSemiconductorClassifierParameters attribute) (Mlp attribute) (MlpAutoEncoder attribute) (MlpDecoder attribute) (MLPEdgeEncoder attribute) (MlpEncoder attribute) (MlpPredictor attribute) (MolBuildingEnvContext attribute) (MolecularWeight attribute), [1] (MoleculeFormat attribute) (MoleculeGNN attribute) (MoleculeGNNOutput attribute) (MoleculeOne attribute) (MoleculeOneParameters attribute) (MoleculePropertyPredictorScorer attribute) (MoLeR attribute) (MoLeRDefaultGenerator attribute) (MoLeRGenerator attribute) (MolformerClassification attribute) (MolformerClassificationParameters attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerMultitaskClassification attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegression attribute) (MolformerRegressionParameters attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MolformerTrainingPipeline attribute) (MolGX attribute) (MolGXGenerator attribute) (MolGXQM9Generator attribute) (MosesDataArguments attribute) (MosesGenerator attribute) (MosesOrganModelArguments attribute) (MosesOrganTrainingArguments attribute) (MosesOrganTrainingPipeline attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesTrainingPipeline attribute) (MosesVAEModelArguments attribute) (MosesVAETrainingArguments attribute) (MosesVAETrainingPipeline attribute) (MPModelPlaceholder attribute) (MPModelProxy attribute) (MseWithNans attribute) (MSLELossNegMix9 attribute) (MSLELossNegMix91 attribute) (MSLELossNegMix92 attribute) (MSLELossNegMix99 attribute) (MultiHeadedAttention attribute) (MultiLayerPerceptron attribute) (MXMNet attribute) (MXMNetConfig attribute) (NoEncoding attribute) (Normalizer attribute) (NumberAromaticRings attribute) (NumberAtoms attribute) (NumberHAcceptors attribute) (NumberHDonors attribute) (NumberHeterocycles attribute) (NumberLargeRings attribute) (NumberRings attribute) (NumberRotatableBonds attribute) (NumberStereocenters attribute) (Objective attribute) (Organ attribute) (OrganGenerator attribute) (OrganIterator attribute) (OrganTox attribute) (OrganToxParameters attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) (PaccMann attribute) (PaccMannDataArguments attribute) (PaccMannGP attribute) (PaccMannGPGenerator attribute) (PaccMannRL attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannTrainingPipeline attribute) (PaccMannVAE attribute) (PaccMannVaeDefaultGenerator attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (PaccMannVAETrainingPipeline attribute) (PartGenerator attribute) (PGT attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (Plogp attribute) (PoissonRatio attribute) (PoissonRatioParameters attribute) (PolymerBlocks attribute) (PolymerBlocksGenerator attribute) (PositionalEncoding attribute) (PositionwiseFeedForward attribute) (PredictorAlgorithm attribute) (PrimarySequenceEncoder attribute) (Property attribute) (PropertyPredictor attribute), [1], [2] (PropertyPredictorParameters attribute) (PropertyPredictorRegistry attribute) (PropertyPredictorScorer attribute) (ProteinLanguageRT attribute) (ProteinPropertyPredictorScorer attribute) (ProteinSequenceConditionalGenerator attribute) (Qed attribute) (QEDScorer attribute) (QM9Dataset attribute) (QM9GapTask attribute) (RDKitDescriptorScorer attribute) (RegistryDict attribute) (RegressionTransformer attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (RegressionTransformerTrainingPipeline attribute) (Reinvent attribute) (ReinventBase attribute) (ReinventConditionalGenerator attribute) (ReinventGenerator attribute) (Representation attribute) (Res attribute) (RFC attribute) (RnnDecoder attribute) (RnnEncoder attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (S3SyncError attribute) (SampledSequencesDTO attribute) (SampledTuple attribute) (SamplingError attribute) (SamplingIterator attribute) (Sas attribute) (SavingArgumentParser attribute), [1] (SavingArguments attribute), [1] (Scaler attribute) (SchNetEncoder attribute) (ScoreSdeGenerator attribute) (Scscore attribute) (ScscoreConfiguration attribute) (SelfiesTokenizer attribute) (ShearModuli attribute) (ShearModuliParameters attribute) (ShiftedSoftplus attribute) (Sider attribute) (SiderParameters attribute) (SiLU attribute) (SimilaritySeed attribute) (SimilaritySeedParameters attribute) (SMARTSScorer attribute) (SMILESGA attribute) (SMILESGAGenerator attribute) (SMILESGAIterator attribute) (SMILESLSTMHC attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMHCIterator attribute) (SMILESLSTMPPO attribute) (SMILESLSTMPPOGenerator attribute) (SMILESLSTMPPOIterator attribute) (SmilesTokenizationPreProcessingDataset attribute) (SmilesTokenizer attribute) (SphericalBasisLayer attribute) (StableDiffusionGenerator attribute) (StratifiedSampler attribute) (SublayerConnection attribute) (TanimotoScorer attribute) (TargetValueScorer attribute) (TDLoss attribute) (Template attribute) (TemplateGenerator attribute) (Tokenizer attribute) (TopicsPredictor attribute) (TopicsZeroShot attribute) (TorchDrugDataArguments attribute) (TorchDrugDataset attribute) (TorchDrugGCPN attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGCPNTrainingPipeline attribute) (TorchDrugGenerator attribute) (TorchDrugGraphAF attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugGraphAFTrainingPipeline attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TorchDrugTrainingPipeline attribute) (TorchLayerNorm attribute) (Tox21 attribute) (Tox21Parameters attribute) (Tpsa attribute) (TrainerArgumentParser attribute) (TrainerArguments attribute) (TrainingPipeline attribute) (TrainingPipelineArguments attribute) (TrajectoryBalance attribute) (TrajectoryBalanceModel attribute) (TranscriptomicConditionalGenerator attribute) (TransformerDecoder attribute) (TransformerDecoderLayer attribute) (TransformerEncoder attribute) (TransformerEncoderLayer attribute) (TransformersToSentenceTransformersArguments attribute) (TransformersTrainingArgumentsCLI attribute) (VAE attribute) (VaeGenerator attribute) (VaeIterator attribute) (VaeMlp attribute) (VaeRnn attribute) (VaeTrans attribute) (ZeroShotClassifier attribute) __eq__() (AaeGenerator method) (AffinityPredictor method) (AlgorithmApplication method) (AlgorithmApplicationArguments method) (AlgorithmConfiguration method) (CatalystGenerator method) (CGCNNDataArguments method) (CGCNNModelArguments method) (CGCNNSavingArguments method) (CGCNNTrainingArguments method) (CrystalsRFCDataArguments method) (CrystalsRFCModelArguments method) (CrystalsRFCSavingArguments method) (CrystalsRFCTrainingArguments method) (DDIMGenerator method) (DDPMGenerator method) (DiffusersConfiguration method) (DiffusionDataArguments method) (DiffusionModelArguments method) (DiffusionSavingArguments method) (DiffusionTrainingArguments method) (GeoDiffGenerator method) (GFlowNetDataArguments method) (GFlowNetModelArguments method) (GFlowNetPytorchLightningTrainingArguments method) (GFlowNetSavingArguments method) (GranularDataArguments method) (GranularModelArguments method) (GranularPytorchLightningTrainingArguments method) (GranularSavingArguments method) (GraphGAGenerator method) (GraphMCTSGenerator method) (GuacaMolDataArguments method) (GuacaMolLSTMModelArguments method) (GuacaMolLSTMTrainingArguments method) (GuacaMolSavingArguments method) (HuggingFaceConfiguration method) (HuggingFaceCTRLGenerator method) (HuggingFaceGPT2Generator method) (HuggingFaceOpenAIGPTGenerator method) (HuggingFaceSeq2SeqGenerator method) (HuggingFaceTransfoXLGenerator method) (HuggingFaceXLMGenerator method) (HuggingFaceXLNetGenerator method) (InferenceArguments method) (KeyBERTGenerator method) (LDMGenerator method) (LDMTextToImageGenerator method) (MoleculeGNNOutput method) (MoLeRDefaultGenerator method) (MolformerDataArguments method) (MolformerModelArguments method) (MolformerSavingArguments method) (MolformerTrainingArguments method) (MolGXQM9Generator method) (MosesDataArguments method) (MosesOrganModelArguments method) (MosesOrganTrainingArguments method) (MosesSavingArguments method) (MosesTrainingArguments method) (MosesVAEModelArguments method) (MosesVAETrainingArguments method) (OrganGenerator method) (PaccMannDataArguments method) (PaccMannGPGenerator method) (PaccMannRLOmicBasedGenerator method) (PaccMannRLProteinBasedGenerator method) (PaccMannSavingArguments method) (PaccMannTrainingArguments method) (PaccMannVAEGenerator method) (PaccMannVAEModelArguments method) (PGTAlgorithmConfiguration method) (PGTCoherenceChecker method) (PGTEditor method) (PGTGenerator method) (PolymerBlocksGenerator method) (RegressionTransformerDataArguments method) (RegressionTransformerModelArguments method) (RegressionTransformerMolecules method) (RegressionTransformerProteins method) (RegressionTransformerSavingArguments method) (RegressionTransformerTrainingArguments method) (ReinventGenerator method) (Representation method) (SampledSequencesDTO method) (SavingArguments method), [1] (ScoreSdeGenerator method) (SMILESGAGenerator method) (SMILESLSTMHCGenerator method) (SMILESLSTMPPOGenerator method) (StableDiffusionGenerator method) (TemplateGenerator method) (TopicsPredictor method) (TorchDrugDataArguments method) (TorchDrugGCPN method) (TorchDrugGCPNModelArguments method) (TorchDrugGraphAF method) (TorchDrugGraphAFModelArguments method) (TorchDrugSavingArguments method) (TorchDrugTrainingArguments method) (TrainerArguments method) (TrainingPipelineArguments method) (TransformersToSentenceTransformersArguments method) (TransformersTrainingArgumentsCLI method) (VaeGenerator method) __getitem__() (CIFData method) (CombinedGranularDataset method) (GFlowNetDataset method) (GranularDataset method) (ListModule method) __getnewargs__() (AnnotationTuple method) (ConfigurationTuple method) (SampledTuple method) __hash__ (AaeGenerator attribute) (AffinityPredictor attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (CatalystGenerator attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DiffusionDataArguments attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (GeoDiffGenerator attribute) (GFlowNetDataArguments attribute) (GFlowNetModelArguments attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GranularDataArguments attribute) (GranularModelArguments attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GuacaMolDataArguments attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolSavingArguments attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (InferenceArguments attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoleculeGNNOutput attribute) (MoLeRDefaultGenerator attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MolGXQM9Generator attribute) (MosesDataArguments attribute) (MosesOrganModelArguments attribute) (MosesOrganTrainingArguments attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesVAEModelArguments attribute) (MosesVAETrainingArguments attribute) (OrganGenerator attribute) (PaccMannDataArguments attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (ReinventGenerator attribute) (Representation attribute) (SampledSequencesDTO attribute) (SavingArguments attribute), [1] (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugDataArguments attribute) (TorchDrugGCPN attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAF attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TrainerArguments attribute) (TrainingPipelineArguments attribute) (TransformersToSentenceTransformersArguments attribute) (TransformersTrainingArgumentsCLI attribute) (VaeGenerator attribute) __hash__() (GT4SDConfiguration method) (GT4SDTestSettings method) __init__() (AAE method) (AaeGenerator method) (AaeIterator method) (ActivityAgainstTarget method) (AdvancedManufacturing method) (AffinityPredictor method) (AlgorithmApplication method) (AlgorithmApplicationArguments method) (AlgorithmConfiguration method) (AliphaticIndex method) (Aromaticity method) (Askcos method) (AtomCustomJSONInitializer method) (AtomInitializer method) (AutoEncoderDataset method) (AverageMeter method) (BasicSelfiesTokenizer method) (BasicSmilesTokenizer method) (BasicTokenizer method) (Bertz method) (BesselBasisLayer method) (BigSmilesTokenizer method) (BimodalMCAAffinityPredictor method) (BomanIndex method) (CallablePropertyPredictor method) (CatalystBindingEnergyPredictor method) (CatalystGenerator method), [1] (CatalystVAE method) (CFConv method) (CGCNNDataArguments method) (CGCNNModelArguments method) (CGCNNSavingArguments method) (CGCNNTrainingArguments method) (Charge method) (ChargeDensity method) (ChemicalLanguageRT method) (CIFData method) (CoherenceCheckGenerator method) (CombinedGranularDataset method) (CombinedScorer method) (ConditionalGenerator method) (ConfigurablePropertyAlgorithmConfiguration method) (ConvBottleneck method) (ConvLayer method) (CrystalGraphConvNet method) (CrystalsRFCDataArguments method) (CrystalsRFCModelArguments method) (CrystalsRFCSavingArguments method) (CrystalsRFCTrainingArguments method) (DDIMGenerator method) (DDPMGenerator method) (DeconvBottleneck method) (DiffusersConfiguration method) (DiffusersGenerationAlgorithm method) (DiffusionDataArguments method) (DiffusionModelArguments method) (DiffusionSavingArguments method) (DiffusionTrainingArguments method) (DistanceScorer method) (Docking method) (DockingTdc method) (DummyDataset method) (DuplicateApplicationRegistration method) (EditGenerator method) (EMA method) (Embeddings method) (Envelope method) (Esol method) (Features method) (GAFGenerator method) (GaussianDistance method) (GaussianProcessRepresentationsSampler method) (GCPNGenerator method) (Generator method), [1], [2], [3], [4], [5] (GeneratorAlgorithm method) (GenericTokenizer method) (GeoDiffGenerator method) (GeoDiffPipeline method) (GFlowNetDataArguments method) (GFlowNetDataModule method) (GFlowNetDataset method) (GFlowNetModelArguments method) (GFlowNetModule method) (GFlowNetPytorchLightningTrainingArguments method) (GFlowNetSavingArguments method) (GFlowNetTask method) (GINEConv method) (GINEncoder method) (Global_MP method) (GPConditionalGenerator method) (GranularBaseModel method) (GranularDataArguments method) (GranularDataModule method) (GranularDataset method) (GranularModelArguments method) (GranularModule method) (GranularPytorchLightningTrainingArguments method) (GranularSavingArguments method) (GraphAction method) (GraphActionCategorical method) (GraphBuildingEnv method) (GraphGA method) (GraphGAGenerator method) (GraphGAIterator method) (GraphMCTS method) (GraphMCTSGenerator method) (GraphMCTSIterator method) (GraphTransformer method) (GraphTransformerGFN method) (GT4SDArtifactManagementConfiguration method) (GT4SDS3Client method) (GT4SDTimeoutError method) (GuacaMolDataArguments method) (GuacaMolGenerator method) (GuacaMolLSTMModelArguments method) (GuacaMolLSTMTrainingArguments method) (GuacaMolSavingArguments method) (HuggingFaceConfiguration method) (HuggingFaceCTRLGenerator method) (HuggingFaceGenerationAlgorithm method) (HuggingFaceGPT2Generator method) (HuggingFaceOpenAIGPTGenerator method) (HuggingFaceSeq2SeqGenerator method) (HuggingFaceTransfoXLGenerator method) (HuggingFaceXLMGenerator method) (HuggingFaceXLNetGenerator method) (HydrophobicRatio method) (InferenceArguments method) (Instability method) (InteractionBlock method) (InvalidAlgorithmConfiguration method) (InvalidItem method) (IsoelectricPoint method) (IsomerScorer method) (IsScaffold method) (KeyBERT method) (KeyBERTGenerator method) (KeywordBERTGenerationAlgorithm method) (KLAnnealer method) (LatentModelDataset method) (LayerNorm method) (LDMGenerator method) (LDMTextToImageGenerator method) (Length method) (Lipinski method) (ListModule method) (Local_MP method) (Logp method) (MaeWithNans method) (MessagePassing method) (MetalNonMetalClassifier method) (Mlp method) (MlpAutoEncoder method) (MlpDecoder method) (MLPEdgeEncoder method) (MlpEncoder method) (MlpPredictor method) (MolBuildingEnvContext method) (MolecularWeight method), [1] (MoleculeGNN method) (MoleculeGNNOutput method) (MoleculeOne method) (MoleculePropertyPredictorScorer method) (MoLeR method) (MoLeRDefaultGenerator method) (MoLeRGenerator method) (MolformerDataArguments method) (MolformerModelArguments method) (MolformerSavingArguments method) (MolformerTrainingArguments method) (MolformerTrainingPipeline method) (MolGX method) (MolGXGenerator method) (MolGXQM9Generator method) (MosesDataArguments method) (MosesGenerator method) (MosesOrganModelArguments method) (MosesOrganTrainingArguments method) (MosesSavingArguments method) (MosesTrainingArguments method) (MosesVAEModelArguments method) (MosesVAETrainingArguments method) (MPModelPlaceholder method) (MPModelProxy method) (MseWithNans method) (MSLELossNegMix9 method) (MSLELossNegMix91 method) (MSLELossNegMix92 method) (MSLELossNegMix99 method) (MultiHeadedAttention method) (MultiLayerPerceptron method) (MXMNet method) (MXMNetConfig method) (NoEncoding method) (Normalizer method) (NumberAromaticRings method) (NumberAtoms method) (NumberHAcceptors method) (NumberHDonors method) (NumberHeterocycles method) (NumberLargeRings method) (NumberRings method) (NumberRotatableBonds method) (NumberStereocenters method) (Objective method) (Organ method) (OrganGenerator method) (OrganIterator method) (OrganTox method) (PaccMann method) (PaccMannDataArguments method) (PaccMannGP method) (PaccMannGPGenerator method) (PaccMannRL method) (PaccMannRLOmicBasedGenerator method) (PaccMannRLProteinBasedGenerator method) (PaccMannSavingArguments method) (PaccMannTrainingArguments method) (PaccMannVAE method) (PaccMannVaeDefaultGenerator method) (PaccMannVAEGenerator method) (PaccMannVAEModelArguments method) (PartGenerator method) (PGT method) (PGTAlgorithmConfiguration method) (PGTCoherenceChecker method) (PGTEditor method) (PGTGenerator method) (Plogp method) (PolymerBlocks method) (PolymerBlocksGenerator method) (PositionalEncoding method) (PositionwiseFeedForward method) (PredictorAlgorithm method) (PrimarySequenceEncoder method) (Property method) (PropertyPredictor method), [1] (PropertyPredictorScorer method) (ProteinLanguageRT method) (ProteinPropertyPredictorScorer method) (ProteinSequenceConditionalGenerator method) (Qed method) (QEDScorer method) (QM9Dataset method) (QM9GapTask method) (RDKitDescriptorScorer method) (RegressionTransformer method) (RegressionTransformerDataArguments method) (RegressionTransformerModelArguments method) (RegressionTransformerMolecules method) (RegressionTransformerProteins method) (RegressionTransformerSavingArguments method) (RegressionTransformerTrainingArguments method) (Reinvent method) (ReinventBase method) (ReinventConditionalGenerator method) (ReinventGenerator method) (Representation method) (Res method) (RFC method) (RnnDecoder method) (RnnEncoder method) (S3SyncError method) (SampledSequencesDTO method) (SamplingError method) (SamplingIterator method) (Sas method) (SavingArguments method), [1] (SchNetEncoder method) (ScoreSdeGenerator method) (Scscore method) (SelfiesTokenizer method) (ShiftedSoftplus method) (SiLU method) (SimilaritySeed method) (SMARTSScorer method) (SMILESGA method) (SMILESGAGenerator method) (SMILESGAIterator method) (SMILESLSTMHC method) (SMILESLSTMHCGenerator method) (SMILESLSTMHCIterator method) (SMILESLSTMPPO method) (SMILESLSTMPPOGenerator method) (SMILESLSTMPPOIterator method) (SmilesTokenizationPreProcessingDataset method) (SmilesTokenizer method) (SphericalBasisLayer method) (StableDiffusionGenerator method) (StratifiedSampler method) (SublayerConnection method) (TanimotoScorer method) (TargetValueScorer method) (TDLoss method) (Template method) (TemplateGenerator method) (Tokenizer method) (TopicsPredictor method) (TopicsZeroShot method) (TorchDrugDataArguments method) (TorchDrugDataset method) (TorchDrugGCPN method) (TorchDrugGCPNModelArguments method) (TorchDrugGenerator method) (TorchDrugGraphAF method) (TorchDrugGraphAFModelArguments method) (TorchDrugSavingArguments method) (TorchDrugTrainingArguments method) (TorchLayerNorm method) (Tpsa method) (TrainerArguments method) (TrainingPipelineArguments method) (TrajectoryBalance method) (TranscriptomicConditionalGenerator method) (TransformerDecoder method) (TransformerDecoderLayer method) (TransformerEncoder method) (TransformerEncoderLayer method) (TransformersToSentenceTransformersArguments method) (TransformersTrainingArgumentsCLI method) (VAE method) (VaeGenerator method) (VaeIterator method) (VaeMlp method) (VaeRnn method) (VaeTrans method) (ZeroShotClassifier method) __iter__() (ListModule method) (SamplingIterator method) (StratifiedSampler method) __len__() (CIFData method) (CombinedGranularDataset method) (GFlowNetDataset method) (GranularDataset method) (ListModule method) (SamplingIterator method) (StratifiedSampler method) __match_args__ (AaeGenerator attribute) (AffinityPredictor attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (AnnotationTuple attribute) (CatalystGenerator attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (ConfigurationTuple attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DiffusionDataArguments attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (GeoDiffGenerator attribute) (GFlowNetDataArguments attribute) (GFlowNetModelArguments attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GranularDataArguments attribute) (GranularModelArguments attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GuacaMolDataArguments attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolSavingArguments attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (InferenceArguments attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoleculeGNNOutput attribute) (MoLeRDefaultGenerator attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MolGXQM9Generator attribute) (MosesDataArguments attribute) (MosesOrganModelArguments attribute) (MosesOrganTrainingArguments attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesVAEModelArguments attribute) (MosesVAETrainingArguments attribute) (OrganGenerator attribute) (PaccMannDataArguments attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (ReinventGenerator attribute) (Representation attribute) (SampledSequencesDTO attribute) (SampledTuple attribute) (SavingArguments attribute), [1] (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugDataArguments attribute) (TorchDrugGCPN attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAF attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TrainerArguments attribute) (TrainingPipelineArguments attribute) (TransformersToSentenceTransformersArguments attribute) (TransformersTrainingArgumentsCLI attribute) (VaeGenerator attribute)

__module__ (AAE attribute) (AaeGenerator attribute) (AaeIterator attribute) (AbsoluteEnergy attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTarget attribute) (ActivityAgainstTargetParameters attribute) (AdvancedManufacturing attribute) (AffinityPredictor attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (AliphaticIndex attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (AnnotationTuple attribute) (ApiTokenParameters attribute) (ApplicationsRegistry attribute) (ArgumentParser attribute) (Aromaticity attribute) (Askcos attribute) (AskcosParameters attribute) (AskcosParameters.Output attribute) (AtomCustomJSONInitializer attribute) (AtomInitializer attribute) (AutoEncoderDataset attribute) (AverageMeter attribute) (BandGap attribute) (BandGapParameters attribute) (BasicSelfiesTokenizer attribute) (BasicSmilesTokenizer attribute) (BasicTokenizer attribute) (Bertz attribute) (BesselBasisLayer attribute) (BigSmilesTokenizer attribute) (BimodalMCAAffinityPredictor attribute) (BomanIndex attribute) (BulkModuli attribute) (BulkModuliParameters attribute) (CallablePropertyPredictor attribute) (CatalystBindingEnergyPredictor attribute) (CatalystGenerator attribute), [1] (CatalystVAE attribute) (CFConv attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNParameters attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (CGCNNTrainingPipeline attribute) (Charge attribute) (ChargeDensity attribute) (ChemicalLanguageRT attribute) (CIFData attribute) (ClinTox attribute) (ClinToxParameters attribute) (CoherenceCheckGenerator attribute) (CombinedGranularDataset attribute) (CombinedScorer attribute) (ConditionalGenerator attribute), [1] (ConfigurableCallablePropertyPredictor attribute) (ConfigurablePropertyAlgorithmConfiguration attribute) (ConfigurationTuple attribute) (ConvBottleneck attribute) (ConvLayer attribute) (CrystalGraphConvNet attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (CrystalsRFCTrainingPipeline attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DeconvBottleneck attribute) (DiffusersConfiguration attribute) (DiffusersGenerationAlgorithm attribute) (DiffusionDataArguments attribute) (DiffusionForVisionTrainingPipeline attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (DistanceScorer attribute) (Docking attribute) (DockingParameters attribute) (DockingTdc attribute) (DockingTdcParameters attribute) (DomainSubmodule attribute) (DummyDataset attribute) (DuplicateApplicationRegistration attribute) (EditGenerator attribute) (EMA attribute) (Embeddings attribute) (Envelope attribute) (Esol attribute) (Features attribute) (FermiEnergy attribute) (FermiEnergyParameters attribute) (FormationEnergy attribute) (FormationEnergyParameters attribute) (GAFGenerator attribute) (GaussianDistance attribute) (GaussianProcessRepresentationsSampler attribute) (GCPNGenerator attribute) (Generator attribute), [1], [2], [3], [4], [5], [6], [7] (GeneratorAlgorithm attribute) (GenericTokenizer attribute) (GeoDiffGenerator attribute) (GeoDiffPipeline attribute) (GFlowNetAlgorithm attribute) (GFlowNetDataArguments attribute) (GFlowNetDataModule attribute) (GFlowNetDataset attribute) (GFlowNetModelArguments attribute) (GFlowNetModule attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GFlowNetTask attribute) (GFlowNetTrainingPipeline attribute) (GINEConv attribute) (GINEncoder attribute) (Global_MP attribute) (GPConditionalGenerator attribute) (GranularBaseModel attribute) (GranularDataArguments attribute) (GranularDataModule attribute) (GranularDataset attribute) (GranularEncoderDecoderModel attribute) (GranularModelArguments attribute) (GranularModule attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GranularTrainingPipeline attribute) (Graph attribute) (GraphAction attribute) (GraphActionCategorical attribute) (GraphActionType attribute) (GraphBuildingEnv attribute) (GraphBuildingEnvContext attribute) (GraphGA attribute) (GraphGAGenerator attribute) (GraphGAIterator attribute) (GraphMCTS attribute) (GraphMCTSGenerator attribute) (GraphMCTSIterator attribute) (GraphTransformer attribute) (GraphTransformerGFN attribute) (GT4SDArtifactManagementConfiguration attribute) (GT4SDConfiguration attribute) (GT4SDS3Client attribute) (GT4SDTestSettings attribute) (GT4SDTimeoutError attribute) (GuacaMolAbstractGenerator attribute) (GuacaMolBaselinesTrainingPipeline attribute) (GuacaMolDataArguments attribute) (GuacaMolGenerator attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolLSTMTrainingPipeline attribute) (GuacaMolSavingArguments attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGenerationAlgorithm attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (HydrophobicRatio attribute) (InferenceArguments attribute) (Instability attribute) (InteractionBlock attribute) (InvalidAlgorithmConfiguration attribute) (InvalidItem attribute) (IpAdressParameters attribute) (IsoelectricPoint attribute) (IsomerScorer attribute) (IsScaffold attribute) (KeyBERT attribute) (KeyBERTGenerator attribute) (KeywordBERTGenerationAlgorithm attribute) (KLAnnealer attribute) (LatentModelDataset attribute) (LayerNorm attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (Length attribute) (Lipinski attribute) (ListModule attribute) (Local_MP attribute) (Logp attribute) (MaeWithNans attribute) (MCAParameters attribute) (MCAPredictor attribute) (MessagePassing attribute) (MetalNonMetalClassifier attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifier attribute) (MetalSemiconductorClassifierParameters attribute) (Mlp attribute) (MlpAutoEncoder attribute) (MlpDecoder attribute) (MLPEdgeEncoder attribute) (MlpEncoder attribute) (MlpPredictor attribute) (MolBuildingEnvContext attribute) (MolecularWeight attribute), [1] (MoleculeFormat attribute) (MoleculeGNN attribute) (MoleculeGNNOutput attribute) (MoleculeOne attribute) (MoleculeOneParameters attribute) (MoleculePropertyPredictorScorer attribute) (MoLeR attribute) (MoLeRDefaultGenerator attribute) (MoLeRGenerator attribute) (MolformerClassification attribute) (MolformerClassificationParameters attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerMultitaskClassification attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegression attribute) (MolformerRegressionParameters attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MolformerTrainingPipeline attribute) (MolGX attribute) (MolGXGenerator attribute) (MolGXQM9Generator attribute) (MosesDataArguments attribute) (MosesGenerator attribute) (MosesOrganModelArguments attribute) (MosesOrganTrainingArguments attribute) (MosesOrganTrainingPipeline attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesTrainingPipeline attribute) (MosesVAEModelArguments attribute) (MosesVAETrainingArguments attribute) (MosesVAETrainingPipeline attribute) (MPModelPlaceholder attribute) (MPModelProxy attribute) (MseWithNans attribute) (MSLELossNegMix9 attribute) (MSLELossNegMix91 attribute) (MSLELossNegMix92 attribute) (MSLELossNegMix99 attribute) (MultiHeadedAttention attribute) (MultiLayerPerceptron attribute) (MXMNet attribute) (MXMNetConfig attribute) (NoEncoding attribute) (Normalizer attribute) (NumberAromaticRings attribute) (NumberAtoms attribute) (NumberHAcceptors attribute) (NumberHDonors attribute) (NumberHeterocycles attribute) (NumberLargeRings attribute) (NumberRings attribute) (NumberRotatableBonds attribute) (NumberStereocenters attribute) (Objective attribute) (Organ attribute) (OrganGenerator attribute) (OrganIterator attribute) (OrganTox attribute) (OrganToxParameters attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) (PaccMann attribute) (PaccMannDataArguments attribute) (PaccMannGP attribute) (PaccMannGPGenerator attribute) (PaccMannRL attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannTrainingPipeline attribute) (PaccMannVAE attribute) (PaccMannVaeDefaultGenerator attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (PaccMannVAETrainingPipeline attribute) (PartGenerator attribute) (PGT attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (Plogp attribute) (PoissonRatio attribute) (PoissonRatioParameters attribute) (PolymerBlocks attribute) (PolymerBlocksGenerator attribute) (PositionalEncoding attribute) (PositionwiseFeedForward attribute) (PredictorAlgorithm attribute) (PrimarySequenceEncoder attribute) (Property attribute) (PropertyPredictor attribute), [1], [2] (PropertyPredictorParameters attribute) (PropertyPredictorRegistry attribute) (PropertyPredictorScorer attribute) (ProteinLanguageRT attribute) (ProteinPropertyPredictorScorer attribute) (ProteinSequenceConditionalGenerator attribute) (Qed attribute) (QEDScorer attribute) (QM9Dataset attribute) (QM9GapTask attribute) (RDKitDescriptorScorer attribute) (RegistryDict attribute) (RegressionTransformer attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (RegressionTransformerTrainingPipeline attribute) (Reinvent attribute) (ReinventBase attribute) (ReinventConditionalGenerator attribute) (ReinventGenerator attribute) (Representation attribute) (Res attribute) (RFC attribute) (RnnDecoder attribute) (RnnEncoder attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (S3SyncError attribute) (SampledSequencesDTO attribute) (SampledTuple attribute) (SamplingError attribute) (SamplingIterator attribute) (Sas attribute) (SavingArgumentParser attribute), [1] (SavingArguments attribute), [1] (Scaler attribute) (SchNetEncoder attribute) (ScoreSdeGenerator attribute) (Scscore attribute) (ScscoreConfiguration attribute) (SelfiesTokenizer attribute) (ShearModuli attribute) (ShearModuliParameters attribute) (ShiftedSoftplus attribute) (Sider attribute) (SiderParameters attribute) (SiLU attribute) (SimilaritySeed attribute) (SimilaritySeedParameters attribute) (SMARTSScorer attribute) (SMILESGA attribute) (SMILESGAGenerator attribute) (SMILESGAIterator attribute) (SMILESLSTMHC attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMHCIterator attribute) (SMILESLSTMPPO attribute) (SMILESLSTMPPOGenerator attribute) (SMILESLSTMPPOIterator attribute) (SmilesTokenizationPreProcessingDataset attribute) (SmilesTokenizer attribute) (SphericalBasisLayer attribute) (StableDiffusionGenerator attribute) (StratifiedSampler attribute) (SublayerConnection attribute) (TanimotoScorer attribute) (TargetValueScorer attribute) (TDLoss attribute) (Template attribute) (TemplateGenerator attribute) (Tokenizer attribute) (TopicsPredictor attribute) (TopicsZeroShot attribute) (TorchDrugDataArguments attribute) (TorchDrugDataset attribute) (TorchDrugGCPN attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGCPNTrainingPipeline attribute) (TorchDrugGenerator attribute) (TorchDrugGraphAF attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugGraphAFTrainingPipeline attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TorchDrugTrainingPipeline attribute) (TorchLayerNorm attribute) (Tox21 attribute) (Tox21Parameters attribute) (Tpsa attribute) (TrainerArgumentParser attribute) (TrainerArguments attribute) (TrainingPipeline attribute) (TrainingPipelineArguments attribute) (TrajectoryBalance attribute) (TrajectoryBalanceModel attribute) (TranscriptomicConditionalGenerator attribute) (TransformerDecoder attribute) (TransformerDecoderLayer attribute) (TransformerEncoder attribute) (TransformerEncoderLayer attribute) (TransformersToSentenceTransformersArguments attribute) (TransformersTrainingArgumentsCLI attribute) (VAE attribute) (VaeGenerator attribute) (VaeIterator attribute) (VaeMlp attribute) (VaeRnn attribute) (VaeTrans attribute) (ZeroShotClassifier attribute) __name__ (AlgorithmApplicationArguments attribute) (CGCNNDataArguments attribute) (CGCNNModelArguments attribute) (CGCNNSavingArguments attribute) (CGCNNTrainingArguments attribute) (CrystalsRFCDataArguments attribute) (CrystalsRFCModelArguments attribute) (CrystalsRFCSavingArguments attribute) (CrystalsRFCTrainingArguments attribute) (DiffusionDataArguments attribute) (DiffusionModelArguments attribute) (DiffusionSavingArguments attribute) (DiffusionTrainingArguments attribute) (GFlowNetDataArguments attribute) (GFlowNetModelArguments attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (GFlowNetSavingArguments attribute) (GranularDataArguments attribute) (GranularModelArguments attribute) (GranularPytorchLightningTrainingArguments attribute) (GranularSavingArguments attribute) (GuacaMolDataArguments attribute) (GuacaMolLSTMModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (GuacaMolSavingArguments attribute) (InferenceArguments attribute) (MolformerDataArguments attribute) (MolformerModelArguments attribute) (MolformerSavingArguments attribute) (MolformerTrainingArguments attribute) (MosesDataArguments attribute) (MosesOrganModelArguments attribute) (MosesSavingArguments attribute) (MosesTrainingArguments attribute) (MosesVAEModelArguments attribute) (PaccMannDataArguments attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (PaccMannVAEModelArguments attribute) (RegressionTransformerDataArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerSavingArguments attribute) (RegressionTransformerTrainingArguments attribute) (SavingArguments attribute), [1] (TorchDrugDataArguments attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) (TrainerArguments attribute) (TrainingPipelineArguments attribute) (TransformersToSentenceTransformersArguments attribute) __orig_bases__ (AaeGenerator attribute) (AdvancedManufacturing attribute) (AffinityPredictor attribute) (AlgorithmConfiguration attribute) (AnnotationTuple attribute) (CatalystGenerator attribute) (ConfigurationTuple attribute) (DiffusersConfiguration attribute) (DiffusersGenerationAlgorithm attribute) (GeneratorAlgorithm attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GuacaMolAbstractGenerator attribute) (GuacaMolGenerator attribute) (HuggingFaceConfiguration attribute) (HuggingFaceGenerationAlgorithm attribute) (KeyBERTGenerator attribute) (KeywordBERTGenerationAlgorithm attribute) (MoLeR attribute) (MoLeRDefaultGenerator attribute) (MolGX attribute) (MolGXQM9Generator attribute) (MosesGenerator attribute) (OrganGenerator attribute) (PaccMann attribute) (PaccMannGP attribute) (PaccMannGPGenerator attribute) (PaccMannRL attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAE attribute) (PaccMannVAEGenerator attribute) (PGT attribute) (PGTAlgorithmConfiguration attribute) (PolymerBlocks attribute) (PolymerBlocksGenerator attribute) (PredictorAlgorithm attribute) (PropertyPredictor attribute) (RegistryDict attribute) (RegressionTransformer attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (Reinvent attribute) (ReinventGenerator attribute) (SampledTuple attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (Template attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TopicsZeroShot attribute) (TorchDrugGCPN attribute) (TorchDrugGenerator attribute) (TorchDrugGraphAF attribute) (VaeGenerator attribute) __parameters__ (AaeGenerator attribute) (AbsoluteEnergy attribute) (AdvancedManufacturing attribute) (AffinityPredictor attribute) (AlgorithmConfiguration attribute) (AutoEncoderDataset attribute) (BandGap attribute) (BulkModuli attribute) (CatalystGenerator attribute) (CIFData attribute) (ClinTox attribute) (CombinedGranularDataset attribute) (ConfigurablePropertyAlgorithmConfiguration attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DiffusersGenerationAlgorithm attribute) (FermiEnergy attribute) (FormationEnergy attribute) (GeneratorAlgorithm attribute) (GeoDiffGenerator attribute) (GFlowNetDataset attribute) (GranularDataset attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GuacaMolAbstractGenerator attribute) (GuacaMolGenerator attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGenerationAlgorithm attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (KeyBERTGenerator attribute) (KeywordBERTGenerationAlgorithm attribute) (LatentModelDataset attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MetalNonMetalClassifier attribute) (MetalSemiconductorClassifier attribute) (MoLeR attribute) (MoLeRDefaultGenerator attribute) (MolformerClassification attribute) (MolformerMultitaskClassification attribute) (MolformerRegression attribute) (MolGX attribute) (MolGXQM9Generator attribute) (MosesGenerator attribute) (OrganGenerator attribute) (OrganTox attribute) (PaccMann attribute) (PaccMannGP attribute) (PaccMannGPGenerator attribute) (PaccMannRL attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAE attribute) (PaccMannVAEGenerator attribute) (PGT attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PoissonRatio attribute) (PolymerBlocks attribute) (PolymerBlocksGenerator attribute) (PredictorAlgorithm attribute) (PropertyPredictor attribute) (QM9Dataset attribute) (RegistryDict attribute) (RegressionTransformer attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (Reinvent attribute) (ReinventGenerator attribute) (SamplingIterator attribute) (ScoreSdeGenerator attribute) (ShearModuli attribute) (Sider attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (SmilesTokenizationPreProcessingDataset attribute) (StableDiffusionGenerator attribute) (StratifiedSampler attribute) (Template attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TopicsZeroShot attribute) (TorchDrugDataset attribute) (TorchDrugGCPN attribute) (TorchDrugGenerator attribute) (TorchDrugGraphAF attribute) (Tox21 attribute) (VaeGenerator attribute) __post_init__() (TransformersTrainingArgumentsCLI method) __private_attributes__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_complete__ (AaeGenerator attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AffinityPredictor attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CatalystGenerator attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (IpAdressParameters attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeRDefaultGenerator attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (OrganToxParameters attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PolymerBlocksGenerator attribute) (PropertyPredictorParameters attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScoreSdeGenerator attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (Tox21Parameters attribute) (VaeGenerator attribute) __pydantic_config__ (AaeGenerator attribute) (AffinityPredictor attribute) (CatalystGenerator attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoLeRDefaultGenerator attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (VaeGenerator attribute) __pydantic_core_schema__ (AaeGenerator attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AffinityPredictor attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CatalystGenerator attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (IpAdressParameters attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeRDefaultGenerator attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (OrganToxParameters attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PolymerBlocksGenerator attribute) (PropertyPredictorParameters attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScoreSdeGenerator attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (Tox21Parameters attribute) (VaeGenerator attribute) __pydantic_custom_init__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_decorators__ (AaeGenerator attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AffinityPredictor attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CatalystGenerator attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (IpAdressParameters attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeRDefaultGenerator attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (OrganToxParameters attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PolymerBlocksGenerator attribute) (PropertyPredictorParameters attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScoreSdeGenerator attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (Tox21Parameters attribute) (VaeGenerator attribute) __pydantic_extra__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_fields__ (AaeGenerator attribute) (AffinityPredictor attribute) (CatalystGenerator attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoLeRDefaultGenerator attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (VaeGenerator attribute) __pydantic_fields_set__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_generic_metadata__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_parent_namespace__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_post_init__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_private__ (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) __pydantic_serializer__ (AaeGenerator attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AffinityPredictor attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CatalystGenerator attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (IpAdressParameters attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeRDefaultGenerator attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (OrganToxParameters attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PolymerBlocksGenerator attribute) (PropertyPredictorParameters attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScoreSdeGenerator attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (Tox21Parameters attribute) (VaeGenerator attribute) __pydantic_validator__ (AaeGenerator attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AffinityPredictor attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CatalystGenerator attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (IpAdressParameters attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeRDefaultGenerator attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (OrganToxParameters attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PolymerBlocksGenerator attribute) (PropertyPredictorParameters attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScoreSdeGenerator attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (Tox21Parameters attribute) (VaeGenerator attribute) __repr__() (AaeGenerator method) (AffinityPredictor method) (AlgorithmApplication method) (AlgorithmApplicationArguments method) (AlgorithmConfiguration method) (AnnotationTuple method) (CatalystGenerator method) (CGCNNDataArguments method) (CGCNNModelArguments method) (CGCNNSavingArguments method) (CGCNNTrainingArguments method) (ConfigurationTuple method) (CrystalsRFCDataArguments method) (CrystalsRFCModelArguments method) (CrystalsRFCSavingArguments method) (CrystalsRFCTrainingArguments method) (DDIMGenerator method) (DDPMGenerator method) (DiffusersConfiguration method) (DiffusionDataArguments method) (DiffusionModelArguments method) (DiffusionSavingArguments method) (DiffusionTrainingArguments method) (GeoDiffGenerator method) (GFlowNetDataArguments method) (GFlowNetModelArguments method) (GFlowNetPytorchLightningTrainingArguments method) (GFlowNetSavingArguments method) (GINEConv method) (GranularDataArguments method) (GranularModelArguments method) (GranularPytorchLightningTrainingArguments method) (GranularSavingArguments method) (Graph method) (GraphAction method) (GraphGAGenerator method) (GraphMCTSGenerator method) (GuacaMolDataArguments method) (GuacaMolLSTMModelArguments method) (GuacaMolLSTMTrainingArguments method) (GuacaMolSavingArguments method) (HuggingFaceConfiguration method) (HuggingFaceCTRLGenerator method) (HuggingFaceGPT2Generator method) (HuggingFaceOpenAIGPTGenerator method) (HuggingFaceSeq2SeqGenerator method) (HuggingFaceTransfoXLGenerator method) (HuggingFaceXLMGenerator method) (HuggingFaceXLNetGenerator method) (InferenceArguments method) (KeyBERTGenerator method) (LDMGenerator method) (LDMTextToImageGenerator method) (MoleculeGNNOutput method) (MoLeRDefaultGenerator method) (MolformerDataArguments method) (MolformerModelArguments method) (MolformerSavingArguments method) (MolformerTrainingArguments method) (MolGXQM9Generator method) (MosesDataArguments method) (MosesOrganModelArguments method) (MosesOrganTrainingArguments method) (MosesSavingArguments method) (MosesTrainingArguments method) (MosesVAEModelArguments method) (MosesVAETrainingArguments method) (OrganGenerator method) (PaccMannDataArguments method) (PaccMannGPGenerator method) (PaccMannRLOmicBasedGenerator method) (PaccMannRLProteinBasedGenerator method) (PaccMannSavingArguments method) (PaccMannTrainingArguments method) (PaccMannVAEGenerator method) (PaccMannVAEModelArguments method) (PGTAlgorithmConfiguration method) (PGTCoherenceChecker method) (PGTEditor method) (PGTGenerator method) (PolymerBlocksGenerator method) (RegressionTransformerDataArguments method) (RegressionTransformerModelArguments method) (RegressionTransformerMolecules method) (RegressionTransformerProteins method) (RegressionTransformerSavingArguments method) (RegressionTransformerTrainingArguments method) (ReinventGenerator method) (Representation method) (SampledSequencesDTO method) (SampledTuple method) (SavingArguments method), [1] (ScoreSdeGenerator method) (SMILESGAGenerator method) (SMILESLSTMHCGenerator method) (SMILESLSTMPPOGenerator method) (StableDiffusionGenerator method) (TemplateGenerator method) (TopicsPredictor method) (TorchDrugDataArguments method) (TorchDrugGCPN method) (TorchDrugGCPNModelArguments method) (TorchDrugGraphAF method) (TorchDrugGraphAFModelArguments method) (TorchDrugSavingArguments method) (TorchDrugTrainingArguments method) (TrainerArguments method) (TrainingPipelineArguments method) (TransformersToSentenceTransformersArguments method) (TransformersTrainingArgumentsCLI method) (VaeGenerator method) __set_size__() (MessagePassing method) __setitem__() (RegistryDict method) __signature__ (AaeGenerator attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AffinityPredictor attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CatalystGenerator attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (IpAdressParameters attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeRDefaultGenerator attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (OrganToxParameters attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PolymerBlocksGenerator attribute) (PropertyPredictorParameters attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScoreSdeGenerator attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (Tox21Parameters attribute) (VaeGenerator attribute) __slots__ (AnnotationTuple attribute) (ConfigurationTuple attribute) (SampledTuple attribute) __str__() (Graph method) __weakref__ (AAE attribute) (AaeIterator attribute) (AlgorithmApplication attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (ApplicationsRegistry attribute) (AskcosParameters.Output attribute) (AtomInitializer attribute) (AverageMeter attribute) (BasicTokenizer attribute) (CombinedScorer attribute) (ConditionalGenerator attribute), [1] (DomainSubmodule attribute) (DummyDataset attribute) (DuplicateApplicationRegistration attribute) (EMA attribute) (Features attribute) (GaussianDistance attribute) (GaussianProcessRepresentationsSampler attribute) (Generator attribute), [1], [2], [3], [4], [5], [6], [7] (GeneratorAlgorithm attribute) (GeoDiffPipeline attribute) (GFlowNetAlgorithm attribute) (GFlowNetTask attribute) (GPConditionalGenerator attribute) (GraphAction attribute) (GraphActionCategorical attribute) (GraphBuildingEnv attribute) (GraphBuildingEnvContext attribute) (GraphGA attribute) (GraphMCTS attribute) (GT4SDArtifactManagementConfiguration attribute) (GT4SDS3Client attribute) (GT4SDTimeoutError attribute) (InferenceArguments attribute) (InvalidAlgorithmConfiguration attribute) (InvalidItem attribute) (KeyBERT attribute) (KLAnnealer attribute) (MCAPredictor attribute) (MoleculeFormat attribute) (MoLeRGenerator attribute) (MolGXGenerator attribute) (MPModelPlaceholder attribute) (MPModelProxy attribute) (MXMNetConfig attribute) (Normalizer attribute) (Objective attribute) (Organ attribute) (OrganIterator attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) (PaccMannVaeDefaultGenerator attribute) (PredictorAlgorithm attribute) (Property attribute) (PropertyPredictor attribute), [1], [2] (PropertyPredictorParameters attribute) (PropertyPredictorRegistry attribute) (RegistryDict attribute) (ReinventBase attribute) (Representation attribute) (RFC attribute) (S3SyncError attribute) (SampledSequencesDTO attribute) (SamplingError attribute) (SavingArguments attribute), [1] (Scaler attribute) (SMILESGA attribute) (SMILESLSTMHC attribute) (SMILESLSTMPPO attribute) (TDLoss attribute) (Tokenizer attribute) (TrainerArguments attribute) (TrainingPipeline attribute) (TrainingPipelineArguments attribute) (TrajectoryBalance attribute) (TransformersToSentenceTransformersArguments attribute) (VAE attribute) (VaeIterator attribute) (ZeroShotClassifier attribute) __wrapped__ (AaeGenerator attribute) (AffinityPredictor attribute) (CatalystGenerator attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoLeRDefaultGenerator attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (VaeGenerator attribute) _abc_impl (AbsoluteEnergy attribute) (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AdvancedManufacturing attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGap attribute) (BandGapParameters attribute) (BulkModuli attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinTox attribute) (ClinToxParameters attribute) (ConditionalGenerator attribute) (DiffusersGenerationAlgorithm attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergy attribute) (FermiEnergyParameters attribute) (FormationEnergy attribute) (FormationEnergyParameters attribute) (GeneratorAlgorithm attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (GuacaMolGenerator attribute) (HuggingFaceGenerationAlgorithm attribute) (IpAdressParameters attribute) (KeywordBERTGenerationAlgorithm attribute) (MCAParameters attribute) (MetalNonMetalClassifier attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifier attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MoLeR attribute) (MolformerClassification attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassification attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegression attribute) (MolformerRegressionParameters attribute) (MolGX attribute) (MosesGenerator attribute) (OrganTox attribute) (OrganToxParameters attribute) (PaccMann attribute) (PaccMannGP attribute) (PaccMannRL attribute) (PaccMannVAE attribute) (PGT attribute) (PhConfiguration attribute) (PoissonRatio attribute) (PoissonRatioParameters attribute) (PolymerBlocks attribute) (PredictorAlgorithm attribute) (PropertyPredictor attribute) (PropertyPredictorParameters attribute) (ProteinSequenceConditionalGenerator attribute) (RegressionTransformer attribute) (Reinvent attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuli attribute) (ShearModuliParameters attribute) (Sider attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Template attribute) (TopicsZeroShot attribute) (TorchDrugGenerator attribute) (Tox21 attribute) (Tox21Parameters attribute) (TranscriptomicConditionalGenerator attribute) _add_dataclass_arguments() (ArgumentParser method) _asdict() (AnnotationTuple method) (ConfigurationTuple method) (SampledTuple method) _autoencoder_step() (GranularModule method) _check_init() (MPModelPlaceholder method) _corrupt_actions() (TrajectoryBalance method) _create_parameters_dictionary() (MolGXGenerator method) _field_defaults (AnnotationTuple attribute) (ConfigurationTuple attribute) (SampledTuple attribute) _fields (AnnotationTuple attribute) (ConfigurationTuple attribute) (SampledTuple attribute) _forward() (MoleculeGNN method) _generate_next_value_() (AskcosParameters.Output method) (DomainSubmodule method) (MoleculeFormat method) (OrganToxParameters.Organs method) (OrganToxParameters.ToxType method) _get_bounds() (GaussianProcessRepresentationsSampler method) _idx_iterator() (SamplingIterator method) _latent_step() (GranularModule method) _make() (AnnotationTuple class method) (ConfigurationTuple class method) (SampledTuple class method) _member_map_ (AskcosParameters.Output attribute) (DomainSubmodule attribute) (MoleculeFormat attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) _member_names_ (AskcosParameters.Output attribute) (DomainSubmodule attribute) (MoleculeFormat attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) _member_type_ (AskcosParameters.Output attribute) (DomainSubmodule attribute) (MoleculeFormat attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) _normalize_weights() (CombinedScorer method) _randomize_scaffolds() (ReinventBase method) _read_xyz() (GFlowNetDataset static method) _register_application() (ApplicationsRegistry class method) _replace() (AnnotationTuple method) (ConfigurationTuple method) (SampledTuple method) _run_step() (GranularBaseModel method) (MlpAutoEncoder method) (MlpPredictor method) (NoEncoding method) (VaeMlp method) (VaeRnn method) (VaeTrans method) _sample_unique_sequences() (ReinventBase method) _sampling_step() (VaeMlp method) (VaeRnn method) (VaeTrans method) _setup_untargeted_generator() (GeneratorAlgorithm method) _value2member_map_ (AskcosParameters.Output attribute) (DomainSubmodule attribute) (MoleculeFormat attribute) (OrganToxParameters.Organs attribute) (OrganToxParameters.ToxType attribute) _wrap_model_mp() (GFlowNetTask method)

A

AAE (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_aae) AaeGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) AaeIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) AbsoluteEnergy (class in gt4sd.properties.crystals.core) AbsoluteEnergyParameters (class in gt4sd.properties.crystals.core) accumulate_grad_batches (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) acquisition_function (PaccMannGPGenerator attribute) action_type_order (GraphBuildingEnvContext attribute) activation (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) activity_against_target() (in module gt4sd.properties.molecules.functions) ActivityAgainstTarget (class in gt4sd.properties.molecules.core) ActivityAgainstTargetParameters (class in gt4sd.properties.molecules.core) adam_beta1 (DiffusionModelArguments attribute) adam_beta2 (DiffusionModelArguments attribute) adam_eps (GFlowNetModelArguments attribute) adam_epsilon (DiffusionModelArguments attribute) adam_weight_decay (DiffusionModelArguments attribute) add_model_specific_args() (GranularBaseModel static method) (MlpAutoEncoder static method) (MlpPredictor static method) (NoEncoding static method) (VaeMlp static method) (VaeRnn static method) (VaeTrans static method) add_padding_tokens() (Tokenizer method) add_start_stop_token (PaccMannDataArguments attribute) add_tokens_from_lists() (in module gt4sd.training_pipelines.regression_transformer.utils) AddEdge (GraphActionType attribute) addition_rewards (MosesOrganTrainingArguments attribute) AddNode (GraphActionType attribute) adjust_length_to_model() (in module gt4sd.algorithms.generation.hugging_face.implementation) (in module gt4sd.algorithms.generation.pgt.implementation) adrenal_gland (OrganToxParameters.Organs attribute) AdvancedManufacturing (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.core) AffinityPredictor (class in gt4sd.algorithms.prediction.paccmann.core) agent_update_interval (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) aggregate() (MessagePassing method) aidx_to_graph_action() (GraphBuildingEnvContext method) (MolBuildingEnvContext method) algorithm (GFlowNetModelArguments attribute) algorithm_application (AbsoluteEnergyParameters attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (ClinToxParameters attribute) (ConfigurationTuple attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GeoDiffGenerator attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (PoissonRatioParameters attribute) (S3Parameters attribute) (SavingArguments attribute), [1] (ScoreSdeGenerator attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (StableDiffusionGenerator attribute) (Tox21Parameters attribute) algorithm_class (AlgorithmApplication attribute) algorithm_name (AaeGenerator attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (CGCNNParameters attribute) (ConfigurationTuple attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MolformerParameters attribute) (OrganGenerator attribute) (PGTCoherenceChecker attribute) (PGTEditor attribute) (PGTGenerator attribute) (ReinventGenerator attribute) (S3Parameters attribute) (SavingArguments attribute), [1] (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (VaeGenerator attribute)

algorithm_type (AaeGenerator attribute) (AffinityPredictor attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (CatalystGenerator attribute) (ConfigurationTuple attribute) (DiffusersConfiguration attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (HuggingFaceConfiguration attribute) (KeyBERTGenerator attribute) (MoLeRDefaultGenerator attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (SavingArguments attribute), [1] (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (VaeGenerator attribute) algorithm_version (AaeGenerator attribute) (AffinityPredictor attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (CatalystGenerator attribute) (DDIMGenerator attribute) (DDPMGenerator attribute) (GeoDiffGenerator attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (KeyBERTGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (MoLeRDefaultGenerator attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (ScoreSdeGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (StableDiffusionGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (VaeGenerator attribute) AlgorithmApplication (class in gt4sd.algorithms.registry) AlgorithmApplicationArguments (class in gt4sd.cli.inference) AlgorithmConfiguration (class in gt4sd.algorithms.core) aliphatic_index() (in module gt4sd.properties.proteins.functions) AliphaticIndex (class in gt4sd.properties.proteins.core) all (OrganToxParameters.ToxType attribute) all_bonds_explicit (PaccMannDataArguments attribute) all_hs_explicit (PaccMannDataArguments attribute) alternate_steps (RegressionTransformerTrainingArguments attribute) amide (AmideConfiguration attribute) (AmidePhConfiguration attribute) AmideConfiguration (class in gt4sd.properties.proteins.core) AmidePhConfiguration (class in gt4sd.properties.proteins.core) annotation (AnnotationTuple attribute) AnnotationTuple (class in gt4sd.algorithms.registry) api_token (ApiTokenParameters attribute) ApiTokenParameters (class in gt4sd.properties.core) applications (ApplicationsRegistry attribute) ApplicationsRegistry (class in gt4sd.algorithms.registry) ArgumentParser (class in gt4sd.cli.argument_parser) Aromaticity (class in gt4sd.properties.proteins.core) aromaticity() (in module gt4sd.properties.proteins.functions) Askcos (class in gt4sd.properties.molecules.core) AskcosParameters (class in gt4sd.properties.molecules.core) AskcosParameters.Output (class in gt4sd.properties.molecules.core) assemble_atom_pair_feature() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) assign() (EMA method) associated_legendre_polynomials() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) atom_fea_len (CGCNNModelArguments attribute) atom_types (GAFGenerator attribute) (GCPNGenerator attribute) AtomCustomJSONInitializer (class in gt4sd.frameworks.cgcnn.data) AtomInitializer (class in gt4sd.frameworks.cgcnn.data) attention() (in module gt4sd.frameworks.granular.ml.models.module) aug (MolformerDataArguments attribute) augment (RegressionTransformerDataArguments attribute) augment_smiles (PaccMannDataArguments attribute) auto_lr_find (GFlowNetPytorchLightningTrainingArguments attribute) (GranularPytorchLightningTrainingArguments attribute) AutoEncoderDataset (class in gt4sd.frameworks.granular.dataloader.dataset) AverageMeter (class in gt4sd.training_pipelines.cgcnn.core)

B

BandGap (class in gt4sd.properties.crystals.core) BandGapParameters (class in gt4sd.properties.crystals.core) baseline_momentum (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) basename (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) BasicSelfiesTokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) BasicSmilesTokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) BasicTokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) batch_norm (GAFGenerator attribute) (GCPNGenerator attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) batch_size (CGCNNParameters attribute) (CGCNNTrainingArguments attribute) (ChemicalLanguageRT attribute) (ConditionalGenerator attribute) (GFlowNetDataArguments attribute) (GranularDataArguments attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (GuacaMolLSTMTrainingArguments attribute) (MolformerDataArguments attribute) (MolformerParameters attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannTrainingArguments attribute) (PaccMannVAEGenerator attribute) (PolymerBlocksGenerator attribute) (ProteinLanguageRT attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (RegressionTransformerTrainingArguments attribute) (ReinventGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (TorchDrugTrainingArguments attribute)

beam_size (MoLeRDefaultGenerator attribute) (MolGXGenerator property) (MolGXQM9Generator attribute) beam_width (PaccMannVAEModelArguments attribute) benchmark_num_samples (SMILESLSTMHCGenerator attribute) Bertz (class in gt4sd.properties.molecules.core) bertz() (in module gt4sd.properties.molecules.functions) bessel_basis() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) BesselBasisLayer (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) bidirectional (PaccMannVAEModelArguments attribute) BigSmilesTokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) BimodalMCAAffinityPredictor (class in gt4sd.algorithms.prediction.paccmann.implementation) boman_index() (in module gt4sd.properties.proteins.functions) BomanIndex (class in gt4sd.properties.proteins.core) bone_marrow (OrganToxParameters.Organs attribute) bootstrap_own_reward (GFlowNetModelArguments attribute) box_center (DockingParameters attribute) box_size (DockingParameters attribute) brain (OrganToxParameters.Organs attribute) build_architecture() (in module gt4sd.frameworks.granular.dataloader.dataset) build_data_columns() (in module gt4sd.frameworks.granular.dataloader.dataset) build_dataset() (in module gt4sd.frameworks.granular.dataloader.dataset) build_dataset_and_architecture() (in module gt4sd.frameworks.granular.dataloader.dataset) build_env_context() (in module gt4sd.frameworks.gflownet.envs) build_model() (in module gt4sd.frameworks.granular.ml.models.model_builder) build_vocab() (BasicSelfiesTokenizer method) (BasicTokenizer method) building_models() (in module gt4sd.frameworks.granular.ml.models.model_builder) BulkModuli (class in gt4sd.properties.crystals.core) BulkModuliParameters (class in gt4sd.properties.crystals.core)

C

cache_dir (DiffusionTrainingArguments attribute) (RegressionTransformerModelArguments attribute) calc_output_shape() (TransformerEncoder method) CallablePropertyPredictor (class in gt4sd.properties.core) canonical (PaccMannDataArguments attribute) CatalystBindingEnergyPredictor (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.nccr.core) CatalystGenerator (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.core) (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.nccr.core) CatalystVAE (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.nccr.core) cc_loss (RegressionTransformerTrainingArguments attribute) CFConv (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) cg_collator (RegressionTransformerTrainingArguments attribute) CGCNNDataArguments (class in gt4sd.training_pipelines.cgcnn.core) CGCNNModelArguments (class in gt4sd.training_pipelines.cgcnn.core) CGCNNParameters (class in gt4sd.properties.crystals.core) CGCNNSavingArguments (class in gt4sd.training_pipelines.cgcnn.core) CGCNNTrainingArguments (class in gt4sd.training_pipelines.cgcnn.core) CGCNNTrainingPipeline (class in gt4sd.training_pipelines.cgcnn.core) Charge (class in gt4sd.properties.proteins.core) charge() (in module gt4sd.properties.proteins.functions) charge_density() (in module gt4sd.properties.proteins.functions) ChargeDensity (class in gt4sd.properties.proteins.core) check_openmp_availabilty() (in module gt4sd.training_pipelines.torchdrug.unpatch) check_val_every_n_epoch (GFlowNetPytorchLightningTrainingArguments attribute) (GranularPytorchLightningTrainingArguments attribute) checkpoint_name (RegressionTransformerSavingArguments attribute) checkpoint_path (PaccMannTrainingArguments attribute) chemical_popularity_logic (AskcosParameters attribute) chemical_property_logic (AskcosParameters attribute) ChemicalLanguageRT (class in gt4sd.algorithms.conditional_generation.regression_transformer.implementation) chronic (OrganToxParameters.ToxType attribute) CIFData (class in gt4sd.frameworks.cgcnn.data) claim_device_name() (in module gt4sd.frameworks.torch) class_eval() (in module gt4sd.training_pipelines.cgcnn.core) ClinTox (class in gt4sd.properties.molecules.core) ClinToxParameters (class in gt4sd.properties.molecules.core) clip_grad (MosesOrganTrainingArguments attribute) clip_grad_param (GFlowNetModelArguments attribute) clip_grad_type (GFlowNetModelArguments attribute) clip_norm() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) clip_param (SMILESLSTMPPOGenerator attribute) clones() (in module gt4sd.frameworks.granular.ml.models.module) coherence_type (PGTCoherenceChecker attribute) CoherenceCheckGenerator (class in gt4sd.algorithms.generation.pgt.implementation) collate() (GraphBuildingEnvContext method) (MolBuildingEnvContext method) collate_fn() (PrimarySequenceEncoder class method) collate_pool() (in module gt4sd.frameworks.cgcnn.data) combine_datasets() (GranularDataModule static method) CombinedGranularDataset (class in gt4sd.frameworks.granular.dataloader.dataset) CombinedScorer (class in gt4sd.properties.scores.core) compile_regression_result() (ConditionalGenerator method)

compute() (PropertyPredictor method) compute_batch_losses() (GFlowNetAlgorithm method) (TrajectoryBalance method) compute_flat_rewards() (GFlowNetTask method) (QM9GapTask method) compute_idx() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) concat_hidden (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) cond_info_to_reward() (GFlowNetTask method) (QM9GapTask method) ConditionalGenerator (class in gt4sd.algorithms.conditional_generation.paccmann_rl.implementation) (class in gt4sd.algorithms.conditional_generation.regression_transformer.implementation) confidence (AffinityPredictor attribute) config_dict() (TorchDrugDataset method) config_name (RegressionTransformerModelArguments attribute) config_path (MosesSavingArguments attribute) config_save (MosesTrainingArguments attribute) ConfigurableCallablePropertyPredictor (class in gt4sd.properties.core) ConfigurablePropertyAlgorithmConfiguration (class in gt4sd.algorithms.core) configuration_class (AlgorithmApplication attribute) configuration_class_as_tuple() (ApplicationsRegistry static method) configuration_file (InferenceArguments attribute) (TrainerArguments attribute) ConfigurationTuple (class in gt4sd.algorithms.registry) configure_optimizers() (GFlowNetModule method) (GranularModule method) construct_batch() (TrajectoryBalance method) construct_property_representation() (Objective method) context (ChemicalLanguageRT attribute) (GFlowNetModelArguments attribute) (ProteinLanguageRT attribute) ConvBottleneck (class in gt4sd.frameworks.granular.ml.models.module) convert_id_to_token() (Tokenizer method) convert_string_to_class() (in module gt4sd.frameworks.gflownet.arg_parser.utils) (in module gt4sd.frameworks.granular.arg_parser.utils) convert_token_to_id() (Tokenizer method) convert_tokens_to_ids() (Tokenizer method) convert_xyz_to_h5() (GFlowNetDataset static method) ConvLayer (class in gt4sd.frameworks.cgcnn.model) copolymer (MoleculeFormat attribute) count_backward_transitions() (GraphBuildingEnv method) create_dataset_from_list() (RegressionTransformerTrainingPipeline method) create_training_data_from_graphs() (TrajectoryBalance method) create_training_data_from_own_samples() (TrajectoryBalance method) criterion (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) CrystalGraphConvNet (class in gt4sd.frameworks.cgcnn.model) crystals (DomainSubmodule attribute) CrystalsRFCDataArguments (class in gt4sd.training_pipelines.crystals_crf.core) CrystalsRFCModelArguments (class in gt4sd.training_pipelines.crystals_crf.core) CrystalsRFCSavingArguments (class in gt4sd.training_pipelines.crystals_crf.core) CrystalsRFCTrainingArguments (class in gt4sd.training_pipelines.crystals_crf.core) CrystalsRFCTrainingPipeline (class in gt4sd.training_pipelines.crystals_crf.core)

D

d_cell (MosesVAEModelArguments attribute) d_d_h (MosesVAEModelArguments attribute) d_dropout (MolformerModelArguments attribute) (MosesVAEModelArguments attribute) d_n_layers (MosesVAEModelArguments attribute) d_z (MosesVAEModelArguments attribute) data_path (MolformerDataArguments attribute) data_root (MolformerDataArguments attribute) datapath (CGCNNDataArguments attribute) (CrystalsRFCDataArguments attribute) dataset (GFlowNetDataArguments attribute) dataset_config_name (DiffusionDataArguments attribute) dataset_name (DiffusionDataArguments attribute) (MolformerDataArguments attribute) (TorchDrugDataArguments attribute) (TorchDrugSavingArguments attribute) dataset_path (GFlowNetDataArguments attribute) (TorchDrugDataArguments attribute) DDIMGenerator (class in gt4sd.algorithms.generation.diffusion.core) ddp_find_unused_parameters (TransformersTrainingArgumentsCLI attribute) DDPMGenerator (class in gt4sd.algorithms.generation.diffusion.core) debug (MolformerModelArguments attribute) decode() (AtomInitializer method) (CatalystVAE method) (Generator method) (GranularEncoderDecoderModel method) (MlpAutoEncoder method) (NoEncoding method) (Representation method) (VaeMlp method) (VaeRnn method) (VaeTrans method) decode_search (PaccMannVAEModelArguments attribute) DeconvBottleneck (class in gt4sd.frameworks.granular.ml.models.module) decoration (SampledSequencesDTO attribute) (SampledTuple attribute) default_value (AnnotationTuple attribute) define_dimensions() (GaussianProcessRepresentationsSampler method) define_latent_models_input_size() (in module gt4sd.frameworks.granular.ml.models.model_builder) denorm() (Normalizer method) denormalize() (ConditionalGenerator method) deserialize() (Representation method) detach() (GraphActionCategorical method) development_mode (GFlowNetPytorchLightningTrainingArguments attribute) device (ConditionalGenerator attribute), [1] (GFlowNetPytorchLightningTrainingArguments attribute) (GraphBuildingEnvContext attribute) (MolformerParameters attribute) (MosesTrainingArguments attribute) device_claim() (in module gt4sd.frameworks.torch) DiffusersConfiguration (class in gt4sd.algorithms.generation.diffusion.core) DiffusersGenerationAlgorithm (class in gt4sd.algorithms.generation.diffusion.core) DiffusionDataArguments (class in gt4sd.training_pipelines.diffusion.core) DiffusionForVisionTrainingPipeline (class in gt4sd.training_pipelines.diffusion.core) DiffusionModelArguments (class in gt4sd.training_pipelines.diffusion.core) DiffusionSavingArguments (class in gt4sd.training_pipelines.diffusion.core) DiffusionTrainingArguments (class in gt4sd.training_pipelines.diffusion.core) dims (MolformerModelArguments attribute)

disable_cuda (CGCNNTrainingArguments attribute) disable_tqdm (TransformersTrainingArgumentsCLI attribute) discriminator_dropout (MosesOrganModelArguments attribute) discriminator_epochs (MosesOrganTrainingArguments attribute) discriminator_layers (MosesOrganModelArguments attribute) discriminator_pretrain_epochs (MosesOrganTrainingArguments attribute) discriminator_updates (MosesOrganTrainingArguments attribute) distance_to_score() (in module gt4sd.properties.scores.core) DistanceScorer (class in gt4sd.properties.scores.core) diversity (KeyBERTGenerator attribute) do_sample (HuggingFaceConfiguration attribute) Docking (class in gt4sd.properties.molecules.core) docking_import_check() (in module gt4sd.properties.utils) DockingParameters (class in gt4sd.properties.molecules.core) DockingTdc (class in gt4sd.properties.molecules.core) DockingTdcParameters (class in gt4sd.properties.molecules.core) domain (AaeGenerator attribute) (AffinityPredictor attribute) (AlgorithmApplicationArguments attribute) (AlgorithmConfiguration attribute) (CatalystGenerator attribute) (ConfigurationTuple attribute) (DiffusersConfiguration attribute) (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (HuggingFaceConfiguration attribute) (KeyBERTGenerator attribute) (MoLeRDefaultGenerator attribute) (MolGXQM9Generator attribute) (OrganGenerator attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PGTAlgorithmConfiguration attribute) (PolymerBlocksGenerator attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (ReinventGenerator attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (SavingArguments attribute), [1] (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) (TemplateGenerator attribute) (TopicsPredictor attribute) (TorchDrugGCPN attribute) (TorchDrugGraphAF attribute) (VaeGenerator attribute) DomainSubmodule (class in gt4sd.properties.core) dropout (MolformerModelArguments attribute) (MosesOrganModelArguments attribute) (PaccMannVAEModelArguments attribute) dummy_training (DiffusionTrainingArguments attribute) DummyDataset (class in gt4sd.algorithms.generation.torchdrug.implementation) DuplicateApplicationRegistration

E

edge_feature (TorchDrugDataArguments attribute) edge_input_dim (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) EditGenerator (class in gt4sd.algorithms.generation.pgt.implementation) EMA (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) ema_inv_gamma (DiffusionTrainingArguments attribute) ema_max_decay (DiffusionTrainingArguments attribute) ema_power (DiffusionTrainingArguments attribute) embedding (PaccMannVAEModelArguments attribute) embedding_size (MosesOrganModelArguments attribute) (PaccMannVAEModelArguments attribute) Embeddings (class in gt4sd.frameworks.granular.ml.models.module) encode() (GranularEncoderDecoderModel method) (MlpAutoEncoder method) (NoEncoding method) (VaeMlp method) (VaeRnn method) (VaeTrans method) encode_decode() (GranularEncoderDecoderModel method) (NoEncoding method) (VaeRnn method) (VaeTrans method) encoder_latent_size (ConditionalGenerator attribute) ensure_artifacts() (AlgorithmConfiguration method) ensure_artifacts_for_version() (AlgorithmConfiguration class method) (ConfigurablePropertyAlgorithmConfiguration method) entity_separator_token (RegressionTransformerTrainingArguments attribute) entity_to_mask (RegressionTransformerTrainingArguments attribute)

entropy_weight (SMILESLSTMPPOGenerator attribute) Envelope (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) environment (GFlowNetModelArguments attribute) episode_size (SMILESLSTMPPOGenerator attribute) epochs (CGCNNTrainingArguments attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (PaccMannTrainingArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) Esol (class in gt4sd.properties.molecules.core) esol() (in module gt4sd.properties.molecules.functions) eval_batch_size (DiffusionDataArguments attribute) eval_dataset_length (MolformerDataArguments attribute) eval_interval (PaccMannTrainingArguments attribute) eval_lambda() (in module gt4sd.cli.argument_parser) eval_steps (RegressionTransformerTrainingArguments attribute) evaluate() (Objective method) evaluation_strategy (TransformersTrainingArgumentsCLI attribute) every_n_epochs (MolformerTrainingArguments attribute) every_n_train_steps (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) exitclose_file_creator() (in module gt4sd.tests.utils) expand() (GaussianDistance method) expansion_time (AskcosParameters attribute) expression_separator (Property attribute) extend_graph_order_radius() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) extract_coherence_types() (CoherenceCheckGenerator method) extract_fields_from_class() (in module gt4sd.cli.load_arguments_from_dataclass) eye (OrganToxParameters.Organs attribute)

F

fc_h (MolformerModelArguments attribute) Features (class in gt4sd.frameworks.crystals_rfc.feature_engine) FermiEnergy (class in gt4sd.properties.crystals.core) FermiEnergyParameters (class in gt4sd.properties.crystals.core) file_name (AskcosParameters attribute) file_path (TorchDrugDataArguments attribute) (TorchDrugSavingArguments attribute) filter_algorithm_applications() (in module gt4sd.cli.algorithms) filter_stubbed() (in module gt4sd.algorithms.conditional_generation.regression_transformer.utils) filter_substructures() (ChemicalLanguageRT method) (ConditionalGenerator method) (ProteinLanguageRT method) filter_threshold (AskcosParameters attribute) find_type() (in module gt4sd.cli.load_arguments_from_dataclass) fix_datasets() (in module gt4sd.training_pipelines.torchdrug.unpatch) fix_schedulers() (in module gt4sd.training_pipelines.torchdrug.unpatch) fixed_representation (Representation attribute), [1] flat_reward_transform() (GFlowNetTask method) (QM9GapTask method) fold (MolformerModelArguments attribute) format_output() (CoherenceCheckGenerator method) (EditGenerator method) (Generator method) FormationEnergy (class in gt4sd.properties.crystals.core) FormationEnergyParameters (class in gt4sd.properties.crystals.core) forward() (BesselBasisLayer method) (CFConv method) (ConvBottleneck method) (ConvLayer method) (CrystalGraphConvNet method) (DeconvBottleneck method) (Embeddings method) (Envelope method) (GINEConv method) (GINEncoder method) (Global_MP method) (GranularBaseModel method) (GraphTransformer method) (GraphTransformerGFN method) (InteractionBlock method) (LayerNorm method) (Local_MP method) (MaeWithNans method) (Mlp method) (MLPEdgeEncoder method) (MoleculeGNN method) (MseWithNans method) (MSLELossNegMix9 method) (MSLELossNegMix91 method) (MSLELossNegMix92 method) (MSLELossNegMix99 method) (MultiHeadedAttention method) (MultiLayerPerceptron method) (MXMNet method) (NoEncoding method) (PositionalEncoding method) (PositionwiseFeedForward method) (PrimarySequenceEncoder method) (Res method) (RnnDecoder method) (RnnEncoder method) (SchNetEncoder method) (ShiftedSoftplus method) (SiLU method) (SphericalBasisLayer method) (SublayerConnection method) (TorchLayerNorm method) (TrajectoryBalanceModel method) (TransformerDecoder method) (TransformerDecoderLayer method) (TransformerEncoder method) (TransformerEncoderLayer method) (VaeTrans method)

fp_key (SimilaritySeedParameters attribute) fp_len (ScscoreConfiguration attribute) fp_rad (ScscoreConfiguration attribute) freeze_embeddings (MosesVAEModelArguments attribute) from_collated_batch() (PrimarySequenceEncoder method) from_position (GranularBaseModel attribute) from_pretrained() (GeoDiffPipeline class method)

G

GAFGenerator (class in gt4sd.algorithms.generation.torchdrug.implementation) gamma (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) GaussianDistance (class in gt4sd.frameworks.cgcnn.data) GaussianProcessRepresentationsSampler (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core) GCPNGenerator (class in gt4sd.algorithms.generation.torchdrug.implementation) gen_sample_array() (StratifiedSampler method) gene_size (SMILESGAGenerator attribute) generate (GeneratorAlgorithm attribute) generate() (MoLeRGenerator method) (MolGXGenerator method) (PaccMannVaeDefaultGenerator method) generate_batch() (AaeIterator method) (ConditionalGenerator method) (Generator method) (GPConditionalGenerator method) (GraphGAIterator method) (GraphMCTSIterator method) (OrganIterator method) (ProteinSequenceConditionalGenerator method) (SMILESGAIterator method) (SMILESLSTMHCIterator method) (SMILESLSTMPPOIterator method) (TranscriptomicConditionalGenerator method) (VaeIterator method) generate_batch_generation() (ConditionalGenerator method) generate_batch_regression() (ConditionalGenerator method) generate_case() (Generator method) generate_forward_trajectory() (in module gt4sd.frameworks.gflownet.envs.graph_building_env) generate_len (PaccMannVAEModelArguments attribute) generate_sampled_tuples() (ReinventConditionalGenerator method) generate_samples() (CatalystGenerator method) (Generator method) (ReinventConditionalGenerator method) generate_tokenized() (PrimarySequenceEncoder method) generated_length (CatalystGenerator attribute) (ConditionalGenerator attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PolymerBlocksGenerator attribute) generations (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (SMILESGAGenerator attribute) Generator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) (class in gt4sd.algorithms.conditional_generation.template.implementation) (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core) (class in gt4sd.algorithms.generation.diffusion.implementation) (class in gt4sd.algorithms.generation.hugging_face.implementation) (class in gt4sd.algorithms.generation.pgt.implementation) (class in gt4sd.algorithms.generation.polymer_blocks.implementation) (class in gt4sd.algorithms.generation.torchdrug.implementation) generator (GeneratorAlgorithm attribute) generator_latent_size (ConditionalGenerator attribute) generator_pretrain_epochs (MosesOrganTrainingArguments attribute) generator_updates (MosesOrganTrainingArguments attribute) GeneratorAlgorithm (class in gt4sd.algorithms.core) GenericTokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) GeoDiffGenerator (class in gt4sd.algorithms.generation.diffusion.core) GeoDiffPipeline (class in gt4sd.algorithms.generation.diffusion.geodiff.core) get_activity_fn() (in module gt4sd.properties.utils) get_algorithm_subdirectories_from_s3_coordinates() (in module gt4sd.configuration) get_algorithm_subdirectories_in_cache() (in module gt4sd.configuration) get_algorithm_subdirectories_with_s3() (in module gt4sd.configuration) get_application() (ApplicationsRegistry class method) get_application_instance() (ApplicationsRegistry class method) get_application_prefix() (AlgorithmConfiguration class method) (ConfigurablePropertyAlgorithmConfiguration method) get_atom_fea() (AtomInitializer method) get_atomic_descriptors() (Features method) get_cached_algorithm_path() (in module gt4sd.configuration) get_classification_modules() (MolformerTrainingPipeline method) get_conditional_generator() (AaeGenerator method) (AffinityPredictor method) (CatalystGenerator method) (DiffusersConfiguration method) (GraphGAGenerator method) (GraphMCTSGenerator method) (HuggingFaceConfiguration method) (KeyBERTGenerator method) (MoLeRDefaultGenerator method) (MolGXQM9Generator method) (OrganGenerator method) (PaccMannGPGenerator method) (PaccMannRLOmicBasedGenerator method) (PaccMannRLProteinBasedGenerator method) (PaccMannVAEGenerator method) (PolymerBlocksGenerator method) (RegressionTransformerMolecules method) (RegressionTransformerProteins method) (ReinventGenerator method) (SMILESGAGenerator method) (SMILESLSTMHCGenerator method) (SMILESLSTMPPOGenerator method) (TemplateGenerator method) (TopicsPredictor method) (TorchDrugGCPN method) (TorchDrugGraphAF method) (VaeGenerator method) get_configuration_class_with_attributes() (in module gt4sd.algorithms.core) get_configuration_instance() (ApplicationsRegistry class method) get_configuration_tuples() (in module gt4sd.cli.algorithms) get_data_and_model_modules() (GFlowNetTrainingPipeline method) (GranularTrainingPipeline method) (MolformerTrainingPipeline method) get_dataloader() (ReinventBase method) get_description() (AbsoluteEnergy class method) (BandGap class method) (BulkModuli class method) (ClinTox class method) (FermiEnergy class method) (FormationEnergy class method) (MetalSemiconductorClassifier class method) (OrganTox class method) (PoissonRatio class method) (ShearModuli class method) (Sider class method) (Tox21 class method) get_descriptor() (in module gt4sd.properties.utils) get_device() (in module gt4sd.frameworks.torch) get_device_from_tensor() (in module gt4sd.frameworks.torch) get_distance() (DistanceScorer method) (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) get_dummy_ids() (PrimarySequenceEncoder method) get_encoded_sym() (Features method) get_features() (Features method) get_filepath_mappings_for_training_pipeline_arguments() (AlgorithmConfiguration class method) (CatalystGenerator class method) (OrganGenerator class method) (PaccMannGPGenerator class method) (PGTAlgorithmConfiguration class method) (PolymerBlocksGenerator class method) (RegressionTransformerMolecules class method) (SMILESLSTMHCGenerator class method) (SMILESLSTMPPOGenerator class method) (TorchDrugGCPN class method) (TorchDrugGraphAF class method) (VaeGenerator class method) get_formula_list() (Features method) get_generator() (AAE method) (AdvancedManufacturing method) (DiffusersGenerationAlgorithm method) (GeneratorAlgorithm method) (GraphGA method) (GraphMCTS method) (GuacaMolGenerator method) (HuggingFaceGenerationAlgorithm method) (KeywordBERTGenerationAlgorithm method) (MoLeR method) (MolGX method) (MosesGenerator method) (Organ method) (PaccMann method) (PaccMannGP method) (PaccMannRL method) (PaccMannVAE method) (PGT method) (PGTAlgorithmConfiguration method) (PGTCoherenceChecker method) (PGTEditor method) (PGTGenerator method) (PolymerBlocks method) (RegressionTransformer method) (Reinvent method) (SMILESGA method) (SMILESLSTMHC method) (SMILESLSTMPPO method) (Template method) (TopicsZeroShot method) (TorchDrugGenerator method) (VAE method) get_gpu_device_names() (in module gt4sd.frameworks.torch) get_hf_training_arg_object() (in module gt4sd.training_pipelines.regression_transformer.utils) get_instance() (GT4SDConfiguration static method) (GT4SDTestSettings static method) get_latent() (ConditionalGenerator method) (ProteinSequenceConditionalGenerator method) (TranscriptomicConditionalGenerator method) get_len() (GFlowNetDataset method) get_maskable_tokens() (ChemicalLanguageRT method) (ConditionalGenerator method) (ProteinLanguageRT method) get_matching_configuration_defaults() (ApplicationsRegistry class method) get_matching_configuration_schema() (ApplicationsRegistry class method) get_model() (ClinTox method) (MetalNonMetalClassifier method) (MolformerClassification method) (MolformerMultitaskClassification method) (MolformerRegression method) (OrganTox method) (PredictorAlgorithm method) (Sider method) (Tox21 method) get_multitask_classification_modules() (MolformerTrainingPipeline method) get_predictor() (PredictorAlgorithm method) get_pretraining_modules() (MolformerTrainingPipeline method) get_property_predictor() (PropertyPredictorRegistry static method) get_property_predictor_parameters_schema() (PropertyPredictorRegistry static method) get_property_predictor_scorer() (PropertyPredictorRegistry static method) get_regression_modules() (MolformerTrainingPipeline method) get_sequence() (in module gt4sd.properties.utils) get_similarity_fn() (in module gt4sd.properties.utils) get_smiles_from_latent() (ConditionalGenerator method) get_stats() (GFlowNetDataset method) get_stratified_batch_sampler() (GranularDataModule static method) get_substructure_indices() (in module gt4sd.algorithms.conditional_generation.regression_transformer.utils) get_target_description() (AlgorithmConfiguration method) (CatalystGenerator method) (GeoDiffGenerator method) (GraphGAGenerator method) (GraphMCTSGenerator method) (HuggingFaceConfiguration method) (KeyBERTGenerator method) (MoLeRDefaultGenerator method) (MolGXQM9Generator method) (PaccMannGPGenerator method) (PaccMannRLOmicBasedGenerator method) (PaccMannRLProteinBasedGenerator method) (PaccMannVAEGenerator method) (PGTAlgorithmConfiguration method) (PolymerBlocksGenerator method) (RegressionTransformerMolecules method) (RegressionTransformerProteins method) (ReinventGenerator method) (SMILESGAGenerator method) (SMILESLSTMHCGenerator method) (SMILESLSTMPPOGenerator method) (TemplateGenerator method) (TopicsPredictor method) get_target_parameters() (in module gt4sd.properties.utils) get_targets() (Features method) get_train_config_dict() (in module gt4sd.training_pipelines.regression_transformer.utils) get_train_val_test_loader() (in module gt4sd.frameworks.cgcnn.data) GFlowNetAlgorithm (class in gt4sd.frameworks.gflownet.ml.module) GFlowNetDataArguments (class in gt4sd.training_pipelines.pytorch_lightning.gflownet.core) GFlowNetDataModule (class in gt4sd.frameworks.gflownet.dataloader.data_module) GFlowNetDataset (class in gt4sd.frameworks.gflownet.dataloader.dataset) GFlowNetModelArguments (class in gt4sd.training_pipelines.pytorch_lightning.gflownet.core) GFlowNetModule (class in gt4sd.frameworks.gflownet.ml.module) GFlowNetPytorchLightningTrainingArguments (class in gt4sd.training_pipelines.pytorch_lightning.gflownet.core) GFlowNetSavingArguments (class in gt4sd.training_pipelines.pytorch_lightning.gflownet.core) GFlowNetTask (class in gt4sd.frameworks.gflownet.dataloader.dataset) GFlowNetTrainingPipeline (class in gt4sd.training_pipelines.pytorch_lightning.gflownet.core) GINEConv (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) GINEncoder (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) global_batch_size (GFlowNetDataArguments attribute) Global_MP (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) GPConditionalGenerator (class in gt4sd.algorithms.controlled_sampling.paccmann_gp.implementation) gpus (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) grad_clipping (MosesVAETrainingArguments attribute) gradient_accumulation_steps (DiffusionModelArguments attribute) gradient_clip_val (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) gradient_interval (RegressionTransformerTrainingArguments attribute) (TorchDrugTrainingArguments attribute) GranularBaseModel (class in gt4sd.frameworks.granular.ml.models.base_model) GranularDataArguments (class in gt4sd.training_pipelines.pytorch_lightning.granular.core) GranularDataModule (class in gt4sd.frameworks.granular.dataloader.data_module) GranularDataset (class in gt4sd.frameworks.granular.dataloader.dataset) GranularEncoderDecoderModel (class in gt4sd.frameworks.granular.ml.models.base_model) GranularModelArguments (class in gt4sd.training_pipelines.pytorch_lightning.granular.core) GranularModule (class in gt4sd.frameworks.granular.ml.module) GranularPytorchLightningTrainingArguments (class in gt4sd.training_pipelines.pytorch_lightning.granular.core) GranularSavingArguments (class in gt4sd.training_pipelines.pytorch_lightning.granular.core) GranularTrainingPipeline (class in gt4sd.training_pipelines.pytorch_lightning.granular.core) Graph (class in gt4sd.frameworks.gflownet.envs.graph_building_env) graph_action_to_aidx() (GraphBuildingEnvContext method) (MolBuildingEnvContext method) graph_feature (TorchDrugDataArguments attribute) graph_field_network() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) graph_to_data() (GraphBuildingEnvContext method) (MolBuildingEnvContext method) graph_to_mol() (GraphBuildingEnvContext method) (MolBuildingEnvContext method) graph_without_edge() (in module gt4sd.frameworks.gflownet.envs.graph_building_env) graph_without_edge_attr() (in module gt4sd.frameworks.gflownet.envs.graph_building_env) graph_without_node() (in module gt4sd.frameworks.gflownet.envs.graph_building_env) graph_without_node_attr() (in module gt4sd.frameworks.gflownet.envs.graph_building_env) GraphAction (class in gt4sd.frameworks.gflownet.envs.graph_building_env) GraphActionCategorical (class in gt4sd.frameworks.gflownet.envs.graph_building_env) GraphActionType (class in gt4sd.frameworks.gflownet.envs.graph_building_env) GraphBuildingEnv (class in gt4sd.frameworks.gflownet.envs.graph_building_env) GraphBuildingEnvContext (class in gt4sd.frameworks.gflownet.envs.graph_building_env) GraphGA (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.graph_ga) GraphGAGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) GraphGAIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) GraphMCTS (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.graph_mcts) GraphMCTSGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) GraphMCTSIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) GraphTransformer (class in gt4sd.frameworks.gflownet.ml.models.graph_transformer) GraphTransformerGFN (class in gt4sd.frameworks.gflownet.ml.models.graph_transformer) greater_is_better (TransformersTrainingArgumentsCLI attribute) gt4sd module gt4sd.algorithms module gt4sd.algorithms.conditional_generation module gt4sd.algorithms.conditional_generation.guacamol module gt4sd.algorithms.conditional_generation.guacamol.core module gt4sd.algorithms.conditional_generation.guacamol.implementation module gt4sd.algorithms.conditional_generation.guacamol.implementation.graph_ga module gt4sd.algorithms.conditional_generation.guacamol.implementation.graph_mcts module gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_aae module gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_organ module gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_vae module gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_ga module gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_lstm_hc module gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_lstm_ppo module gt4sd.algorithms.conditional_generation.key_bert module gt4sd.algorithms.conditional_generation.key_bert.core module gt4sd.algorithms.conditional_generation.key_bert.implementation module gt4sd.algorithms.conditional_generation.molgx module gt4sd.algorithms.conditional_generation.molgx.core module gt4sd.algorithms.conditional_generation.molgx.implementation module gt4sd.algorithms.conditional_generation.paccmann_rl module gt4sd.algorithms.conditional_generation.paccmann_rl.core module gt4sd.algorithms.conditional_generation.paccmann_rl.implementation module gt4sd.algorithms.conditional_generation.regression_transformer module gt4sd.algorithms.conditional_generation.regression_transformer.core module gt4sd.algorithms.conditional_generation.regression_transformer.implementation module gt4sd.algorithms.conditional_generation.regression_transformer.utils module gt4sd.algorithms.conditional_generation.reinvent module gt4sd.algorithms.conditional_generation.reinvent.core module gt4sd.algorithms.conditional_generation.reinvent.implementation module gt4sd.algorithms.conditional_generation.reinvent.reinvent_core module gt4sd.algorithms.conditional_generation.reinvent.reinvent_core.core module gt4sd.algorithms.conditional_generation.template module gt4sd.algorithms.conditional_generation.template.core module gt4sd.algorithms.conditional_generation.template.implementation module gt4sd.algorithms.conditional_generation.tests module gt4sd.algorithms.controlled_sampling module gt4sd.algorithms.controlled_sampling.advanced_manufacturing module gt4sd.algorithms.controlled_sampling.advanced_manufacturing.core module gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation module gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core module gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.nccr module gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.nccr.core module gt4sd.algorithms.controlled_sampling.class_controlled_sampling module gt4sd.algorithms.controlled_sampling.class_controlled_sampling.core module gt4sd.algorithms.controlled_sampling.paccmann_gp module gt4sd.algorithms.controlled_sampling.paccmann_gp.core module gt4sd.algorithms.controlled_sampling.paccmann_gp.implementation module gt4sd.algorithms.controlled_sampling.tests module gt4sd.algorithms.core module gt4sd.algorithms.generation module gt4sd.algorithms.generation.diffusion module gt4sd.algorithms.generation.diffusion.core module gt4sd.algorithms.generation.diffusion.geodiff module

gt4sd.algorithms.generation.diffusion.geodiff.core module gt4sd.algorithms.generation.diffusion.geodiff.model module gt4sd.algorithms.generation.diffusion.geodiff.model.core module gt4sd.algorithms.generation.diffusion.geodiff.model.layers module gt4sd.algorithms.generation.diffusion.geodiff.model.utils module gt4sd.algorithms.generation.diffusion.implementation module gt4sd.algorithms.generation.hugging_face module gt4sd.algorithms.generation.hugging_face.core module gt4sd.algorithms.generation.hugging_face.implementation module gt4sd.algorithms.generation.moler module gt4sd.algorithms.generation.moler.core module gt4sd.algorithms.generation.moler.implementation module gt4sd.algorithms.generation.paccmann_vae module gt4sd.algorithms.generation.paccmann_vae.core module gt4sd.algorithms.generation.paccmann_vae.implementation module gt4sd.algorithms.generation.pgt module gt4sd.algorithms.generation.pgt.core module gt4sd.algorithms.generation.pgt.implementation module gt4sd.algorithms.generation.polymer_blocks module gt4sd.algorithms.generation.polymer_blocks.core module gt4sd.algorithms.generation.polymer_blocks.implementation module gt4sd.algorithms.generation.tests module gt4sd.algorithms.generation.torchdrug module gt4sd.algorithms.generation.torchdrug.core module gt4sd.algorithms.generation.torchdrug.implementation module gt4sd.algorithms.prediction module gt4sd.algorithms.prediction.paccmann module gt4sd.algorithms.prediction.paccmann.core module gt4sd.algorithms.prediction.paccmann.implementation module gt4sd.algorithms.prediction.tests module gt4sd.algorithms.prediction.topics_zero_shot module gt4sd.algorithms.prediction.topics_zero_shot.core module gt4sd.algorithms.prediction.topics_zero_shot.implementation module gt4sd.algorithms.registry module gt4sd.algorithms.tests module gt4sd.cli module gt4sd.cli.algorithms module gt4sd.cli.argument_parser module gt4sd.cli.hf_to_st_converter module gt4sd.cli.inference module gt4sd.cli.load_arguments_from_dataclass module gt4sd.cli.saving module gt4sd.cli.trainer module gt4sd.cli.upload module gt4sd.configuration module gt4sd.conftest module gt4sd.domains module gt4sd.domains.core module gt4sd.domains.materials module gt4sd.domains.materials.protein_encoding module gt4sd.domains.tests module gt4sd.exceptions module gt4sd.extras module gt4sd.frameworks module gt4sd.frameworks.cgcnn module gt4sd.frameworks.cgcnn.data module gt4sd.frameworks.cgcnn.model module gt4sd.frameworks.crystals_rfc module gt4sd.frameworks.crystals_rfc.feature_engine module gt4sd.frameworks.crystals_rfc.rf_classifier module gt4sd.frameworks.enzeptional module gt4sd.frameworks.enzeptional.tests module gt4sd.frameworks.gflownet module gt4sd.frameworks.gflownet.arg_parser module gt4sd.frameworks.gflownet.arg_parser.parser module gt4sd.frameworks.gflownet.arg_parser.utils module gt4sd.frameworks.gflownet.dataloader module gt4sd.frameworks.gflownet.dataloader.data_module module gt4sd.frameworks.gflownet.dataloader.dataset module gt4sd.frameworks.gflownet.dataloader.sampler module gt4sd.frameworks.gflownet.envs module gt4sd.frameworks.gflownet.envs.graph_building_env module gt4sd.frameworks.gflownet.envs.mol_building_env module gt4sd.frameworks.gflownet.loss module gt4sd.frameworks.gflownet.loss.td_loss module gt4sd.frameworks.gflownet.loss.trajectory_balance module gt4sd.frameworks.gflownet.ml module gt4sd.frameworks.gflownet.ml.models module gt4sd.frameworks.gflownet.ml.models.graph_transformer module gt4sd.frameworks.gflownet.ml.models.mxmnet module gt4sd.frameworks.gflownet.ml.module module gt4sd.frameworks.gflownet.tests module gt4sd.frameworks.gflownet.tests.qm9 module gt4sd.frameworks.gflownet.train module gt4sd.frameworks.gflownet.train.core module gt4sd.frameworks.gflownet.util module gt4sd.frameworks.granular module gt4sd.frameworks.granular.arg_parser module gt4sd.frameworks.granular.arg_parser.parser module gt4sd.frameworks.granular.arg_parser.utils module gt4sd.frameworks.granular.dataloader module gt4sd.frameworks.granular.dataloader.data_module module gt4sd.frameworks.granular.dataloader.dataset module gt4sd.frameworks.granular.dataloader.sampler module gt4sd.frameworks.granular.ml module gt4sd.frameworks.granular.ml.models module gt4sd.frameworks.granular.ml.models.activation module gt4sd.frameworks.granular.ml.models.base_model module gt4sd.frameworks.granular.ml.models.loss module gt4sd.frameworks.granular.ml.models.mlp_auto_encoder module gt4sd.frameworks.granular.ml.models.mlp_auto_encoder.core module gt4sd.frameworks.granular.ml.models.mlp_predictor module gt4sd.frameworks.granular.ml.models.mlp_predictor.core module gt4sd.frameworks.granular.ml.models.model_builder module gt4sd.frameworks.granular.ml.models.module module gt4sd.frameworks.granular.ml.models.no_encoding module gt4sd.frameworks.granular.ml.models.no_encoding.core module gt4sd.frameworks.granular.ml.models.utils module gt4sd.frameworks.granular.ml.models.vae_mlp module gt4sd.frameworks.granular.ml.models.vae_mlp.core module gt4sd.frameworks.granular.ml.models.vae_rnn module gt4sd.frameworks.granular.ml.models.vae_rnn.core module gt4sd.frameworks.granular.ml.models.vae_trans module gt4sd.frameworks.granular.ml.models.vae_trans.core module gt4sd.frameworks.granular.ml.module module gt4sd.frameworks.granular.tests module gt4sd.frameworks.granular.tokenizer module gt4sd.frameworks.granular.tokenizer.tokenizer module gt4sd.frameworks.granular.train module gt4sd.frameworks.granular.train.core module gt4sd.frameworks.torch module gt4sd.frameworks.torch.vae module gt4sd.properties module gt4sd.properties.core module gt4sd.properties.crystals module gt4sd.properties.crystals.core module gt4sd.properties.molecules module gt4sd.properties.molecules.core module gt4sd.properties.molecules.functions module gt4sd.properties.proteins module gt4sd.properties.proteins.core module gt4sd.properties.proteins.functions module gt4sd.properties.scorer module gt4sd.properties.scores module gt4sd.properties.scores.core module gt4sd.properties.tests module gt4sd.properties.utils module gt4sd.s3 module gt4sd.tests module gt4sd.tests.utils module gt4sd.training_pipelines module gt4sd.training_pipelines.cgcnn module gt4sd.training_pipelines.cgcnn.core module gt4sd.training_pipelines.core module gt4sd.training_pipelines.crystals_crf module gt4sd.training_pipelines.crystals_crf.core module gt4sd.training_pipelines.diffusion module gt4sd.training_pipelines.diffusion.core module gt4sd.training_pipelines.guacamol_baselines module gt4sd.training_pipelines.guacamol_baselines.core module gt4sd.training_pipelines.guacamol_baselines.smiles_lstm module gt4sd.training_pipelines.guacamol_baselines.smiles_lstm.core module gt4sd.training_pipelines.moses module gt4sd.training_pipelines.moses.core module gt4sd.training_pipelines.moses.organ module gt4sd.training_pipelines.moses.organ.core module gt4sd.training_pipelines.moses.vae module gt4sd.training_pipelines.moses.vae.core module gt4sd.training_pipelines.paccmann module gt4sd.training_pipelines.paccmann.core module gt4sd.training_pipelines.paccmann.vae module gt4sd.training_pipelines.paccmann.vae.core module gt4sd.training_pipelines.pytorch_lightning module gt4sd.training_pipelines.pytorch_lightning.gflownet module gt4sd.training_pipelines.pytorch_lightning.gflownet.core module gt4sd.training_pipelines.pytorch_lightning.granular module gt4sd.training_pipelines.pytorch_lightning.granular.core module gt4sd.training_pipelines.pytorch_lightning.molformer module gt4sd.training_pipelines.pytorch_lightning.molformer.core module gt4sd.training_pipelines.regression_transformer module gt4sd.training_pipelines.regression_transformer.core module gt4sd.training_pipelines.regression_transformer.implementation module gt4sd.training_pipelines.regression_transformer.utils module gt4sd.training_pipelines.tests module gt4sd.training_pipelines.torchdrug module gt4sd.training_pipelines.torchdrug.core module gt4sd.training_pipelines.torchdrug.dataset module gt4sd.training_pipelines.torchdrug.gcpn module gt4sd.training_pipelines.torchdrug.gcpn.core module gt4sd.training_pipelines.torchdrug.graphaf module gt4sd.training_pipelines.torchdrug.graphaf.core module gt4sd.training_pipelines.torchdrug.unpatch module gt4sd_ci (GT4SDTestSettings attribute) gt4sd_create_unverified_ssl_context (GT4SDConfiguration attribute) gt4sd_disable_cudnn (GT4SDConfiguration attribute) gt4sd_local_cache_path (GT4SDConfiguration attribute) gt4sd_local_cache_path_algorithms (GT4SDConfiguration attribute) gt4sd_local_cache_path_properties (GT4SDConfiguration attribute) gt4sd_max_number_of_samples (GT4SDConfiguration attribute) gt4sd_max_number_of_stuck_calls (GT4SDConfiguration attribute) gt4sd_max_runtime (GT4SDConfiguration attribute) gt4sd_s3_access_key (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) gt4sd_s3_access_key_hub (GT4SDConfiguration attribute) gt4sd_s3_bucket_algorithms (GT4SDConfiguration attribute) gt4sd_s3_bucket_hub_algorithms (GT4SDConfiguration attribute) gt4sd_s3_bucket_hub_properties (GT4SDConfiguration attribute) gt4sd_s3_bucket_properties (GT4SDConfiguration attribute) gt4sd_s3_host (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) gt4sd_s3_host_hub (GT4SDConfiguration attribute) gt4sd_s3_modules (GT4SDArtifactManagementConfiguration attribute) gt4sd_s3_secret_key (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) gt4sd_s3_secret_key_hub (GT4SDConfiguration attribute) gt4sd_s3_secure (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) gt4sd_s3_secure_hub (GT4SDConfiguration attribute) GT4SDArtifactManagementConfiguration (class in gt4sd.configuration) GT4SDConfiguration (class in gt4sd.configuration) GT4SDS3Client (class in gt4sd.s3) GT4SDTestSettings (class in gt4sd.tests.utils) GT4SDTimeoutError GuacaMolAbstractGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) GuacaMolBaselinesTrainingPipeline (class in gt4sd.training_pipelines.guacamol_baselines.core) GuacaMolDataArguments (class in gt4sd.training_pipelines.guacamol_baselines.core) GuacaMolGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) GuacaMolLSTMModelArguments (class in gt4sd.training_pipelines.guacamol_baselines.smiles_lstm.core) GuacaMolLSTMTrainingArguments (class in gt4sd.training_pipelines.guacamol_baselines.smiles_lstm.core) GuacaMolLSTMTrainingPipeline (class in gt4sd.training_pipelines.guacamol_baselines.smiles_lstm.core) GuacaMolSavingArguments (class in gt4sd.training_pipelines.guacamol_baselines.core)

H

h_fea_len (CGCNNModelArguments attribute) heart (OrganToxParameters.Organs attribute) hello_name() (Generator method) hidden_dim_mlp (TorchDrugGCPNModelArguments attribute) hidden_dims (GAFGenerator attribute) (GCPNGenerator attribute) (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) hidden_size (GuacaMolLSTMModelArguments attribute) (MosesOrganModelArguments attribute) homo_energy_value (MolGXGenerator property) (MolGXQM9Generator attribute)

host_ip (IpAdressParameters attribute) hub_strategy (TransformersTrainingArgumentsCLI attribute) HuggingFaceConfiguration (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceCTRLGenerator (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceGenerationAlgorithm (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceGPT2Generator (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceOpenAIGPTGenerator (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceSeq2SeqGenerator (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceTransfoXLGenerator (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceXLMGenerator (class in gt4sd.algorithms.generation.hugging_face.core) HuggingFaceXLNetGenerator (class in gt4sd.algorithms.generation.hugging_face.core) hydrophobic_ratio() (in module gt4sd.properties.proteins.functions) HydrophobicRatio (class in gt4sd.properties.proteins.core)

I

illegal_action_logreward (GFlowNetModelArguments attribute) in_channels (DiffusionModelArguments attribute) indices() (MXMNet method) inference() (GranularEncoderDecoderModel method) (NoEncoding method) (VaeRnn method) (VaeTrans method) inference_direct() (RnnDecoder method) (TransformerDecoder method) InferenceArguments (class in gt4sd.cli.inference) init() (MXMNet method) init_smiles (GraphMCTSGenerator attribute) initial_point_generator (PaccMannGPGenerator attribute) input_a (PGTCoherenceChecker attribute) input_b (PGTCoherenceChecker attribute) input_dim (GAFGenerator attribute) (GCPNGenerator attribute) input_keep (PaccMannVAEModelArguments attribute) input_representations (PropertyPredictor attribute), [1]

input_text (PGTEditor attribute) (PGTGenerator attribute) input_type (PGTEditor attribute) Instability (class in gt4sd.properties.proteins.core) instability() (in module gt4sd.properties.proteins.functions) InteractionBlock (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) InvalidAlgorithmConfiguration InvalidItem inverse_flat_reward_transform() (QM9GapTask method) IpAdressParameters (class in gt4sd.properties.core) is_local_edge() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) is_sampling (DiffusionTrainingArguments attribute) is_sane() (GraphBuildingEnvContext method) (MolBuildingEnvContext method) is_scaffold() (in module gt4sd.properties.molecules.functions) isfloat() (ConditionalGenerator static method) isoelectric_point() (in module gt4sd.properties.proteins.functions) IsoelectricPoint (class in gt4sd.properties.proteins.core) IsomerScorer (class in gt4sd.properties.scores.core) IsScaffold (class in gt4sd.properties.molecules.core)

J

Jn() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet)

Jn_zeros() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet)

K

k (HuggingFaceConfiguration attribute) keep_top (SMILESLSTMHCGenerator attribute) kekulize (PaccMannDataArguments attribute) KeyBERT (class in gt4sd.algorithms.conditional_generation.key_bert.implementation) KeyBERTGenerator (class in gt4sd.algorithms.conditional_generation.key_bert.core) KeywordBERTGenerationAlgorithm (class in gt4sd.algorithms.conditional_generation.key_bert.core)

kidney (OrganToxParameters.Organs attribute) kl_div_weight (SMILESLSTMPPOGenerator attribute) kl_growth (PaccMannVAEModelArguments attribute) kl_start (MosesVAETrainingArguments attribute) kl_w_end (MosesVAETrainingArguments attribute) kl_w_start (MosesVAETrainingArguments attribute) KLAnnealer (class in gt4sd.frameworks.granular.ml.models.utils)

L

label_names (TransformersTrainingArgumentsCLI attribute) language_encoding() (ChemicalLanguageRT method) (ConditionalGenerator method) (ProteinLanguageRT method) latent_dim (PaccMannVAEModelArguments attribute) latent_size (GranularEncoderDecoderModel attribute) LatentModelDataset (class in gt4sd.frameworks.granular.dataloader.dataset) LayerNorm (class in gt4sd.frameworks.granular.ml.models.module) layers_per_block (DiffusionModelArguments attribute) lazy (TorchDrugDataArguments attribute) LDMGenerator (class in gt4sd.algorithms.generation.diffusion.core) LDMTextToImageGenerator (class in gt4sd.algorithms.generation.diffusion.core) learning_rate (DiffusionModelArguments attribute) (GFlowNetPytorchLightningTrainingArguments attribute) (PaccMannTrainingArguments attribute) (TorchDrugTrainingArguments attribute) Length (class in gt4sd.properties.proteins.core) length (HuggingFaceConfiguration attribute) length() (in module gt4sd.properties.proteins.functions) ligands (AffinityPredictor attribute) limit (PaccMannGPGenerator attribute) limit_val_batches (GFlowNetPytorchLightningTrainingArguments attribute) Lipinski (class in gt4sd.properties.molecules.core) lipinski() (in module gt4sd.properties.molecules.functions) list_available() (ApplicationsRegistry class method) (PropertyPredictorRegistry static method) list_available_scorers() (PropertyPredictorRegistry static method) list_bucket_names() (GT4SDS3Client method) list_directories() (GT4SDS3Client method) list_object_names() (GT4SDS3Client method) list_remote_versions() (AlgorithmConfiguration class method) list_versions() (AlgorithmConfiguration class method) (ConfigurablePropertyAlgorithmConfiguration method) (DDIMGenerator class method) (DDPMGenerator class method) (GeoDiffGenerator class method) (HuggingFaceCTRLGenerator class method) (HuggingFaceGPT2Generator class method) (HuggingFaceOpenAIGPTGenerator class method) (HuggingFaceSeq2SeqGenerator class method) (HuggingFaceTransfoXLGenerator class method) (HuggingFaceXLMGenerator class method) (HuggingFaceXLNetGenerator class method) (KeyBERTGenerator class method) (LDMGenerator class method) (LDMTextToImageGenerator class method) (PaccMannVAEGenerator class method) (ScoreSdeGenerator class method) (StableDiffusionGenerator class method) ListModule (class in gt4sd.frameworks.granular.ml.models.module) liver (OrganToxParameters.Organs attribute)

load_best_model_at_end (TransformersTrainingArgumentsCLI attribute) load_config_dict() (TorchDrugDataset class method) load_data() (RFC method) load_inference() (ConditionalGenerator method) load_model() (ConditionalGenerator method) (Generator method), [1], [2], [3] (KeyBERT method) (RFC method) load_molgx() (MolGXGenerator static method) load_pipeline() (ZeroShotClassifier method) load_pretrained_paccmann() (Generator method) load_state_dict() (AtomInitializer method) (Normalizer method) load_task_models() (GFlowNetTask method) (QM9GapTask method) load_vocab() (in module gt4sd.frameworks.granular.tokenizer.tokenizer) Local_MP (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) local_rank (DiffusionTrainingArguments attribute) log_dir (GFlowNetPytorchLightningTrainingArguments attribute) log_every_n_steps (GFlowNetPytorchLightningTrainingArguments attribute) log_file (MosesTrainingArguments attribute) log_interval (PaccMannTrainingArguments attribute) (RegressionTransformerTrainingArguments attribute) (TorchDrugTrainingArguments attribute) log_prob() (GraphActionCategorical method) log_z() (MPModelPlaceholder method) (TrajectoryBalanceModel method) logging_dir (DiffusionTrainingArguments attribute) logging_strategy (TransformersTrainingArgumentsCLI attribute) Logp (class in gt4sd.properties.molecules.core) logp() (in module gt4sd.properties.molecules.functions) logsoftmax() (GraphActionCategorical method) lr (CGCNNTrainingArguments attribute) (GranularModelArguments attribute) (GuacaMolLSTMTrainingArguments attribute) (MosesOrganTrainingArguments attribute) lr_decay (GFlowNetModelArguments attribute) lr_end (MosesVAETrainingArguments attribute) lr_milestone (CGCNNTrainingArguments attribute) lr_multiplier (MolformerModelArguments attribute) lr_n_mult (MosesVAETrainingArguments attribute) lr_n_period (MosesVAETrainingArguments attribute) lr_n_restarts (MosesVAETrainingArguments attribute) lr_scheduler (DiffusionModelArguments attribute) lr_scheduler_type (TransformersTrainingArgumentsCLI attribute) lr_start (MolformerModelArguments attribute) (MosesVAETrainingArguments attribute) lr_warm_up_steps (DiffusionModelArguments attribute) lumo_energy_value (MolGXGenerator property) (MolGXQM9Generator attribute) lung (OrganToxParameters.Organs attribute) lymph_node (OrganToxParameters.Organs attribute)

M

mae() (in module gt4sd.training_pipelines.cgcnn.core) MaeWithNans (class in gt4sd.frameworks.granular.ml.models.loss) main() (in module gt4sd.cli.hf_to_st_converter) (in module gt4sd.cli.inference) (in module gt4sd.cli.saving) (in module gt4sd.cli.trainer) (in module gt4sd.cli.upload) make_features() (Features method) mammary_gland (OrganToxParameters.Organs attribute) map_tensor_dict() (in module gt4sd.frameworks.torch) mask_entity_separator (RegressionTransformerTrainingArguments attribute) mask_length (Property property) max_atoms (GraphMCTSGenerator attribute) max_branching (AskcosParameters attribute) max_chemprop_c (AskcosParameters attribute) max_chemprop_h (AskcosParameters attribute) max_chemprop_n (AskcosParameters attribute) max_chemprop_o (AskcosParameters attribute) max_children (GraphMCTSGenerator attribute) max_cum_prob (AskcosParameters attribute) max_depth (AskcosParameters attribute) max_edge_unroll (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) max_epochs (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) max_len (AaeGenerator attribute) (GuacaMolLSTMModelArguments attribute) (MolformerDataArguments attribute) (OrganGenerator attribute) (SMILESLSTMHCGenerator attribute) (VaeGenerator attribute) max_length (MosesOrganTrainingArguments attribute) (PGTAlgorithmConfiguration attribute) max_node (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) max_nodes (GFlowNetModelArguments attribute) max_ppg (AskcosParameters attribute) max_resample (Generator attribute) max_runtime (GeneratorAlgorithm attribute) (PredictorAlgorithm attribute) max_samples (GeneratorAlgorithm attribute) (RegressionTransformer attribute) max_sequence_length (ReinventGenerator attribute) max_span_length (RegressionTransformerTrainingArguments attribute) maximum (Property attribute) maximum_keyphrase_ngram (KeyBERTGenerator attribute) maximum_number_of_candidates (MolGXGenerator property) (MolGXQM9Generator attribute) maximum_number_of_nodes (MolGXGenerator property) (MolGXQM9Generator attribute) maximum_number_of_sampling_steps (PaccMannGPGenerator attribute) maximum_number_of_solutions (MolGXGenerator property) (MolGXQM9Generator attribute) MCAParameters (class in gt4sd.properties.molecules.core) MCAPredictor (class in gt4sd.algorithms.prediction.paccmann.implementation) measure_name (MolformerDataArguments attribute) measure_names (MolformerDataArguments attribute) message() (CFConv method) (GINEConv method) (Global_MP method) (MessagePassing method) MessagePassing (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) MetalNonMetalClassifier (class in gt4sd.properties.crystals.core) MetalNonMetalClassifierParameters (class in gt4sd.properties.crystals.core) MetalSemiconductorClassifier (class in gt4sd.properties.crystals.core) MetalSemiconductorClassifierParameters (class in gt4sd.properties.crystals.core) min_chempop_products (AskcosParameters attribute) min_chempop_reactants (AskcosParameters attribute) min_len (MolformerModelArguments attribute) minimum (Property attribute) minimum_keyphrase_ngram (KeyBERTGenerator attribute) mixed_precision (DiffusionTrainingArguments attribute) Mlp (class in gt4sd.frameworks.granular.ml.models.module) mlp() (in module gt4sd.frameworks.gflownet.ml.models.graph_transformer) MLP() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) MlpAutoEncoder (class in gt4sd.frameworks.granular.ml.models.mlp_auto_encoder.core) MlpDecoder (class in gt4sd.frameworks.granular.ml.models.module) MLPEdgeEncoder (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) MlpEncoder (class in gt4sd.frameworks.granular.ml.models.module) MlpPredictor (class in gt4sd.frameworks.granular.ml.models.mlp_predictor.core) mock_wrong_s3_env() (in module gt4sd.conftest) modality (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (GeoDiffGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (ScoreSdeGenerator attribute) (StableDiffusionGenerator attribute) mode (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) model (CatalystBindingEnergyPredictor attribute) (CatalystVAE attribute) (GFlowNetModelArguments attribute) (Representation attribute), [1] model_computed_fields (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) model_config (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) model_config_filepath (GuacaMolSavingArguments attribute) model_fields (AbsoluteEnergyParameters attribute) (ActivityAgainstTargetParameters attribute) (AmideConfiguration attribute) (AmidePhConfiguration attribute) (ApiTokenParameters attribute) (AskcosParameters attribute) (BandGapParameters attribute) (BulkModuliParameters attribute) (CGCNNParameters attribute) (ClinToxParameters attribute) (DockingParameters attribute) (DockingTdcParameters attribute) (FermiEnergyParameters attribute) (FormationEnergyParameters attribute) (GT4SDConfiguration attribute) (GT4SDTestSettings attribute) (IpAdressParameters attribute) (MCAParameters attribute) (MetalNonMetalClassifierParameters attribute) (MetalSemiconductorClassifierParameters attribute) (MoleculeOneParameters attribute) (MolformerClassificationParameters attribute) (MolformerMultitaskClassificationParameters attribute) (MolformerParameters attribute) (MolformerRegressionParameters attribute) (OrganToxParameters attribute) (PhConfiguration attribute) (PoissonRatioParameters attribute) (PropertyPredictorParameters attribute) (S3Parameters attribute) (S3ParametersCrystals attribute) (S3ParametersMolecules attribute) (ScscoreConfiguration attribute) (ShearModuliParameters attribute) (SiderParameters attribute) (SimilaritySeedParameters attribute) (Tox21Parameters attribute) model_filepath (GuacaMolSavingArguments attribute) model_list_path (GranularModelArguments attribute) model_name (TopicsPredictor attribute) model_name_or_path (TransformersToSentenceTransformersArguments attribute) model_path (DiffusionModelArguments attribute) (GFlowNetSavingArguments attribute) (GranularSavingArguments attribute) (MosesSavingArguments attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (RegressionTransformerModelArguments attribute) (RegressionTransformerSavingArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) model_save (MosesTrainingArguments attribute) model_type (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (GeoDiffGenerator attribute) (HuggingFaceConfiguration attribute) (HuggingFaceCTRLGenerator attribute) (HuggingFaceGPT2Generator attribute) (HuggingFaceOpenAIGPTGenerator attribute) (HuggingFaceSeq2SeqGenerator attribute) (HuggingFaceTransfoXLGenerator attribute) (HuggingFaceXLMGenerator attribute) (HuggingFaceXLNetGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (PGTAlgorithmConfiguration attribute) (RegressionTransformerModelArguments attribute) (ScoreSdeGenerator attribute) (StableDiffusionGenerator attribute) module gt4sd gt4sd.algorithms gt4sd.algorithms.conditional_generation gt4sd.algorithms.conditional_generation.guacamol gt4sd.algorithms.conditional_generation.guacamol.core gt4sd.algorithms.conditional_generation.guacamol.implementation gt4sd.algorithms.conditional_generation.guacamol.implementation.graph_ga gt4sd.algorithms.conditional_generation.guacamol.implementation.graph_mcts gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_aae gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_organ gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_vae gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_ga gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_lstm_hc gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_lstm_ppo gt4sd.algorithms.conditional_generation.key_bert gt4sd.algorithms.conditional_generation.key_bert.core gt4sd.algorithms.conditional_generation.key_bert.implementation gt4sd.algorithms.conditional_generation.molgx gt4sd.algorithms.conditional_generation.molgx.core gt4sd.algorithms.conditional_generation.molgx.implementation gt4sd.algorithms.conditional_generation.paccmann_rl gt4sd.algorithms.conditional_generation.paccmann_rl.core gt4sd.algorithms.conditional_generation.paccmann_rl.implementation gt4sd.algorithms.conditional_generation.regression_transformer gt4sd.algorithms.conditional_generation.regression_transformer.core gt4sd.algorithms.conditional_generation.regression_transformer.implementation gt4sd.algorithms.conditional_generation.regression_transformer.utils gt4sd.algorithms.conditional_generation.reinvent gt4sd.algorithms.conditional_generation.reinvent.core gt4sd.algorithms.conditional_generation.reinvent.implementation gt4sd.algorithms.conditional_generation.reinvent.reinvent_core gt4sd.algorithms.conditional_generation.reinvent.reinvent_core.core gt4sd.algorithms.conditional_generation.template gt4sd.algorithms.conditional_generation.template.core gt4sd.algorithms.conditional_generation.template.implementation gt4sd.algorithms.conditional_generation.tests gt4sd.algorithms.controlled_sampling gt4sd.algorithms.controlled_sampling.advanced_manufacturing gt4sd.algorithms.controlled_sampling.advanced_manufacturing.core gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.nccr gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.nccr.core gt4sd.algorithms.controlled_sampling.class_controlled_sampling gt4sd.algorithms.controlled_sampling.class_controlled_sampling.core gt4sd.algorithms.controlled_sampling.paccmann_gp gt4sd.algorithms.controlled_sampling.paccmann_gp.core gt4sd.algorithms.controlled_sampling.paccmann_gp.implementation gt4sd.algorithms.controlled_sampling.tests gt4sd.algorithms.core gt4sd.algorithms.generation gt4sd.algorithms.generation.diffusion gt4sd.algorithms.generation.diffusion.core gt4sd.algorithms.generation.diffusion.geodiff gt4sd.algorithms.generation.diffusion.geodiff.core gt4sd.algorithms.generation.diffusion.geodiff.model gt4sd.algorithms.generation.diffusion.geodiff.model.core gt4sd.algorithms.generation.diffusion.geodiff.model.layers gt4sd.algorithms.generation.diffusion.geodiff.model.utils gt4sd.algorithms.generation.diffusion.implementation gt4sd.algorithms.generation.hugging_face gt4sd.algorithms.generation.hugging_face.core gt4sd.algorithms.generation.hugging_face.implementation gt4sd.algorithms.generation.moler gt4sd.algorithms.generation.moler.core gt4sd.algorithms.generation.moler.implementation gt4sd.algorithms.generation.paccmann_vae gt4sd.algorithms.generation.paccmann_vae.core gt4sd.algorithms.generation.paccmann_vae.implementation gt4sd.algorithms.generation.pgt gt4sd.algorithms.generation.pgt.core gt4sd.algorithms.generation.pgt.implementation gt4sd.algorithms.generation.polymer_blocks gt4sd.algorithms.generation.polymer_blocks.core gt4sd.algorithms.generation.polymer_blocks.implementation gt4sd.algorithms.generation.tests gt4sd.algorithms.generation.torchdrug gt4sd.algorithms.generation.torchdrug.core gt4sd.algorithms.generation.torchdrug.implementation gt4sd.algorithms.prediction gt4sd.algorithms.prediction.paccmann gt4sd.algorithms.prediction.paccmann.core gt4sd.algorithms.prediction.paccmann.implementation gt4sd.algorithms.prediction.tests gt4sd.algorithms.prediction.topics_zero_shot gt4sd.algorithms.prediction.topics_zero_shot.core gt4sd.algorithms.prediction.topics_zero_shot.implementation gt4sd.algorithms.registry gt4sd.algorithms.tests gt4sd.cli gt4sd.cli.algorithms gt4sd.cli.argument_parser gt4sd.cli.hf_to_st_converter gt4sd.cli.inference gt4sd.cli.load_arguments_from_dataclass gt4sd.cli.saving gt4sd.cli.trainer gt4sd.cli.upload gt4sd.configuration gt4sd.conftest gt4sd.domains gt4sd.domains.core gt4sd.domains.materials gt4sd.domains.materials.protein_encoding gt4sd.domains.tests gt4sd.exceptions gt4sd.extras gt4sd.frameworks gt4sd.frameworks.cgcnn gt4sd.frameworks.cgcnn.data gt4sd.frameworks.cgcnn.model gt4sd.frameworks.crystals_rfc gt4sd.frameworks.crystals_rfc.feature_engine gt4sd.frameworks.crystals_rfc.rf_classifier gt4sd.frameworks.enzeptional gt4sd.frameworks.enzeptional.tests gt4sd.frameworks.gflownet gt4sd.frameworks.gflownet.arg_parser gt4sd.frameworks.gflownet.arg_parser.parser gt4sd.frameworks.gflownet.arg_parser.utils gt4sd.frameworks.gflownet.dataloader gt4sd.frameworks.gflownet.dataloader.data_module gt4sd.frameworks.gflownet.dataloader.dataset gt4sd.frameworks.gflownet.dataloader.sampler gt4sd.frameworks.gflownet.envs gt4sd.frameworks.gflownet.envs.graph_building_env gt4sd.frameworks.gflownet.envs.mol_building_env gt4sd.frameworks.gflownet.loss gt4sd.frameworks.gflownet.loss.td_loss gt4sd.frameworks.gflownet.loss.trajectory_balance gt4sd.frameworks.gflownet.ml gt4sd.frameworks.gflownet.ml.models gt4sd.frameworks.gflownet.ml.models.graph_transformer gt4sd.frameworks.gflownet.ml.models.mxmnet gt4sd.frameworks.gflownet.ml.module gt4sd.frameworks.gflownet.tests gt4sd.frameworks.gflownet.tests.qm9 gt4sd.frameworks.gflownet.train gt4sd.frameworks.gflownet.train.core gt4sd.frameworks.gflownet.util gt4sd.frameworks.granular gt4sd.frameworks.granular.arg_parser gt4sd.frameworks.granular.arg_parser.parser gt4sd.frameworks.granular.arg_parser.utils gt4sd.frameworks.granular.dataloader gt4sd.frameworks.granular.dataloader.data_module gt4sd.frameworks.granular.dataloader.dataset gt4sd.frameworks.granular.dataloader.sampler gt4sd.frameworks.granular.ml gt4sd.frameworks.granular.ml.models gt4sd.frameworks.granular.ml.models.activation gt4sd.frameworks.granular.ml.models.base_model gt4sd.frameworks.granular.ml.models.loss gt4sd.frameworks.granular.ml.models.mlp_auto_encoder gt4sd.frameworks.granular.ml.models.mlp_auto_encoder.core gt4sd.frameworks.granular.ml.models.mlp_predictor gt4sd.frameworks.granular.ml.models.mlp_predictor.core gt4sd.frameworks.granular.ml.models.model_builder gt4sd.frameworks.granular.ml.models.module gt4sd.frameworks.granular.ml.models.no_encoding gt4sd.frameworks.granular.ml.models.no_encoding.core gt4sd.frameworks.granular.ml.models.utils gt4sd.frameworks.granular.ml.models.vae_mlp gt4sd.frameworks.granular.ml.models.vae_mlp.core gt4sd.frameworks.granular.ml.models.vae_rnn gt4sd.frameworks.granular.ml.models.vae_rnn.core gt4sd.frameworks.granular.ml.models.vae_trans gt4sd.frameworks.granular.ml.models.vae_trans.core gt4sd.frameworks.granular.ml.module gt4sd.frameworks.granular.tests gt4sd.frameworks.granular.tokenizer gt4sd.frameworks.granular.tokenizer.tokenizer gt4sd.frameworks.granular.train gt4sd.frameworks.granular.train.core gt4sd.frameworks.torch gt4sd.frameworks.torch.vae gt4sd.properties gt4sd.properties.core gt4sd.properties.crystals gt4sd.properties.crystals.core gt4sd.properties.molecules gt4sd.properties.molecules.core gt4sd.properties.molecules.functions gt4sd.properties.proteins gt4sd.properties.proteins.core gt4sd.properties.proteins.functions gt4sd.properties.scorer gt4sd.properties.scores gt4sd.properties.scores.core gt4sd.properties.tests gt4sd.properties.utils gt4sd.s3 gt4sd.tests gt4sd.tests.utils gt4sd.training_pipelines gt4sd.training_pipelines.cgcnn gt4sd.training_pipelines.cgcnn.core gt4sd.training_pipelines.core gt4sd.training_pipelines.crystals_crf gt4sd.training_pipelines.crystals_crf.core gt4sd.training_pipelines.diffusion gt4sd.training_pipelines.diffusion.core gt4sd.training_pipelines.guacamol_baselines gt4sd.training_pipelines.guacamol_baselines.core gt4sd.training_pipelines.guacamol_baselines.smiles_lstm gt4sd.training_pipelines.guacamol_baselines.smiles_lstm.core gt4sd.training_pipelines.moses gt4sd.training_pipelines.moses.core gt4sd.training_pipelines.moses.organ gt4sd.training_pipelines.moses.organ.core gt4sd.training_pipelines.moses.vae gt4sd.training_pipelines.moses.vae.core gt4sd.training_pipelines.paccmann gt4sd.training_pipelines.paccmann.core gt4sd.training_pipelines.paccmann.vae gt4sd.training_pipelines.paccmann.vae.core gt4sd.training_pipelines.pytorch_lightning gt4sd.training_pipelines.pytorch_lightning.gflownet gt4sd.training_pipelines.pytorch_lightning.gflownet.core gt4sd.training_pipelines.pytorch_lightning.granular gt4sd.training_pipelines.pytorch_lightning.granular.core gt4sd.training_pipelines.pytorch_lightning.molformer gt4sd.training_pipelines.pytorch_lightning.molformer.core gt4sd.training_pipelines.regression_transformer gt4sd.training_pipelines.regression_transformer.core gt4sd.training_pipelines.regression_transformer.implementation gt4sd.training_pipelines.regression_transformer.utils gt4sd.training_pipelines.tests gt4sd.training_pipelines.torchdrug gt4sd.training_pipelines.torchdrug.core gt4sd.training_pipelines.torchdrug.dataset gt4sd.training_pipelines.torchdrug.gcpn gt4sd.training_pipelines.torchdrug.gcpn.core gt4sd.training_pipelines.torchdrug.graphaf gt4sd.training_pipelines.torchdrug.graphaf.core gt4sd.training_pipelines.torchdrug.unpatch

module (ConfigurablePropertyAlgorithmConfiguration attribute) mol2graph() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) mol_to_graph() (GraphBuildingEnvContext method) (MolBuildingEnvContext method) MolBuildingEnvContext (class in gt4sd.frameworks.gflownet.envs.mol_building_env) molecular_weight() (in module gt4sd.properties.molecules.functions) (in module gt4sd.properties.proteins.functions) MolecularWeight (class in gt4sd.properties.molecules.core) (class in gt4sd.properties.proteins.core) MoleculeFormat (class in gt4sd.domains.materials) MoleculeGNN (class in gt4sd.algorithms.generation.diffusion.geodiff.model.core) MoleculeGNNOutput (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) MoleculeOne (class in gt4sd.properties.molecules.core) MoleculeOneParameters (class in gt4sd.properties.molecules.core) MoleculePropertyPredictorScorer (class in gt4sd.properties.scorer) molecules (DomainSubmodule attribute) MoLeR (class in gt4sd.algorithms.generation.moler.core) MoLeRDefaultGenerator (class in gt4sd.algorithms.generation.moler.core) MoLeRGenerator (class in gt4sd.algorithms.generation.moler.implementation) MolformerClassification (class in gt4sd.properties.molecules.core) MolformerClassificationParameters (class in gt4sd.properties.molecules.core) MolformerDataArguments (class in gt4sd.training_pipelines.pytorch_lightning.molformer.core) MolformerModelArguments (class in gt4sd.training_pipelines.pytorch_lightning.molformer.core) MolformerMultitaskClassification (class in gt4sd.properties.molecules.core) MolformerMultitaskClassificationParameters (class in gt4sd.properties.molecules.core) MolformerParameters (class in gt4sd.properties.molecules.core) MolformerRegression (class in gt4sd.properties.molecules.core) MolformerRegressionParameters (class in gt4sd.properties.molecules.core) MolformerSavingArguments (class in gt4sd.training_pipelines.pytorch_lightning.molformer.core) MolformerTrainingArguments (class in gt4sd.training_pipelines.pytorch_lightning.molformer.core) MolformerTrainingPipeline (class in gt4sd.training_pipelines.pytorch_lightning.molformer.core) MolGX (class in gt4sd.algorithms.conditional_generation.molgx.core) MolGXGenerator (class in gt4sd.algorithms.conditional_generation.molgx.implementation) MolGXQM9Generator (class in gt4sd.algorithms.conditional_generation.molgx.core) mols_to_sample (SMILESLSTMHCGenerator attribute) momentum (CGCNNTrainingArguments attribute) (GFlowNetModelArguments attribute) monitor (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) MosesDataArguments (class in gt4sd.training_pipelines.moses.core) MosesGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) MosesOrganModelArguments (class in gt4sd.training_pipelines.moses.organ.core) MosesOrganTrainingArguments (class in gt4sd.training_pipelines.moses.organ.core) MosesOrganTrainingPipeline (class in gt4sd.training_pipelines.moses.organ.core) MosesSavingArguments (class in gt4sd.training_pipelines.moses.core) MosesTrainingArguments (class in gt4sd.training_pipelines.moses.core) MosesTrainingPipeline (class in gt4sd.training_pipelines.moses.core) MosesVAEModelArguments (class in gt4sd.training_pipelines.moses.vae.core) MosesVAETrainingArguments (class in gt4sd.training_pipelines.moses.vae.core) MosesVAETrainingPipeline (class in gt4sd.training_pipelines.moses.vae.core) MPModelPlaceholder (class in gt4sd.frameworks.gflownet.util) MPModelProxy (class in gt4sd.frameworks.gflownet.util) MseWithNans (class in gt4sd.frameworks.granular.ml.models.loss) MSLELossNegMix9 (class in gt4sd.frameworks.granular.ml.models.loss) MSLELossNegMix91 (class in gt4sd.frameworks.granular.ml.models.loss) MSLELossNegMix92 (class in gt4sd.frameworks.granular.ml.models.loss) MSLELossNegMix99 (class in gt4sd.frameworks.granular.ml.models.loss) multigenerational (OrganToxParameters.ToxType attribute) MultiHeadedAttention (class in gt4sd.frameworks.granular.ml.models.module) MultiLayerPerceptron (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) mutation_rate (GraphGAGenerator attribute) MXMNet (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) MXMNetConfig (class in gt4sd.frameworks.gflownet.ml.models.mxmnet)

N

n_batch (AaeGenerator attribute) (MosesOrganTrainingArguments attribute) (MosesVAETrainingArguments attribute) (OrganGenerator attribute) (VaeGenerator attribute) n_conv (CGCNNModelArguments attribute) n_embd (MolformerModelArguments attribute) n_epochs (GuacaMolLSTMTrainingArguments attribute) (SMILESLSTMHCGenerator attribute) n_h (CGCNNModelArguments attribute) n_head (MolformerModelArguments attribute) n_jobs (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (MosesOrganTrainingArguments attribute) (MosesVAETrainingArguments attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) n_last (MosesVAETrainingArguments attribute) n_layer (MolformerModelArguments attribute) n_layers (GuacaMolLSTMModelArguments attribute) (PaccMannVAEModelArguments attribute) n_mutations (SMILESGAGenerator attribute) n_ref_subsample (MosesOrganTrainingArguments attribute) n_samples (AaeGenerator attribute) (OrganGenerator attribute) (VaeGenerator attribute) n_workers (MosesOrganTrainingArguments attribute) (MosesVAETrainingArguments attribute) name (DockingParameters attribute) (Property attribute) new() (GraphBuildingEnv method) nll (SampledSequencesDTO attribute) (SampledTuple attribute) no_edge (TorchDrugGraphAFModelArguments attribute) no_kekulization (TorchDrugDataArguments attribute) no_repeat_ngram_size (PGTAlgorithmConfiguration attribute) node_feature (TorchDrugDataArguments attribute) NoEncoding (class in gt4sd.frameworks.granular.ml.models.no_encoding.core) none_checker() (in module gt4sd.cli.argument_parser) none_checker_bool() (in module gt4sd.cli.argument_parser) norm() (Normalizer method) normalize (Property attribute) normalize() (ConditionalGenerator method) normalize_data() (RFC method) normalize_sequence() (ConditionalGenerator method) Normalizer (class in gt4sd.frameworks.cgcnn.model) num_beams (HuggingFaceConfiguration attribute) num_classes (MolformerModelArguments attribute) num_cond_dim (GraphBuildingEnvContext attribute) num_data_loader_workers (GFlowNetDataArguments attribute) num_edge_attr_logits (GraphBuildingEnvContext attribute) num_edge_dim (GraphBuildingEnvContext attribute) num_edge_flow_layers (TorchDrugGraphAFModelArguments attribute) num_edge_sample (TorchDrugGraphAFModelArguments attribute) num_emb (GFlowNetModelArguments attribute) num_epochs (DiffusionDataArguments attribute) (SMILESLSTMPPOGenerator attribute)

num_feats (MolformerModelArguments attribute) num_layers (GFlowNetModelArguments attribute) (MosesOrganModelArguments attribute) num_new_node_values (GraphBuildingEnvContext attribute) num_node_attr_logits (GraphBuildingEnvContext attribute) num_node_dim (GraphBuildingEnvContext attribute) num_node_flow_layers (TorchDrugGraphAFModelArguments attribute) num_node_sample (TorchDrugGraphAFModelArguments attribute) num_offline (GFlowNetModelArguments attribute) num_relation (GAFGenerator attribute) (GCPNGenerator attribute) num_return_sequences (PGTAlgorithmConfiguration attribute) (PGTCoherenceChecker attribute) num_sample (Generator attribute) num_samples (MoLeRDefaultGenerator attribute) num_sims (GraphMCTSGenerator attribute) num_step (AskcosParameters.Output attribute) num_train_epochs (RegressionTransformerTrainingArguments attribute) num_train_timesteps (DiffusionModelArguments attribute) num_training_steps (GFlowNetPytorchLightningTrainingArguments attribute) num_trials (AskcosParameters attribute) num_worker (TorchDrugTrainingArguments attribute) num_workers (GFlowNetPytorchLightningTrainingArguments attribute) (GranularDataArguments attribute) (MoLeRDefaultGenerator attribute) (MolformerDataArguments attribute) (PaccMannDataArguments attribute) number_of_aromatic_rings() (in module gt4sd.properties.molecules.functions) number_of_atoms() (in module gt4sd.properties.molecules.functions) number_of_candidates (KeyBERTGenerator attribute) (MolGXGenerator property) (MolGXQM9Generator attribute) number_of_h_acceptors() (in module gt4sd.properties.molecules.functions) number_of_h_donors() (in module gt4sd.properties.molecules.functions) number_of_heterocycles() (in module gt4sd.properties.molecules.functions) number_of_initial_points (PaccMannGPGenerator attribute) number_of_large_rings() (in module gt4sd.properties.molecules.functions) number_of_optimization_rounds (PaccMannGPGenerator attribute) number_of_points (CatalystGenerator attribute) number_of_rings() (in module gt4sd.properties.molecules.functions) number_of_rotatable_bonds() (in module gt4sd.properties.molecules.functions) number_of_samples (InferenceArguments attribute) number_of_sequences (HuggingFaceConfiguration attribute) number_of_steps (CatalystGenerator attribute) (PaccMannGPGenerator attribute) number_of_stereocenters() (in module gt4sd.properties.molecules.functions) NumberAromaticRings (class in gt4sd.properties.molecules.core) NumberAtoms (class in gt4sd.properties.molecules.core) NumberHAcceptors (class in gt4sd.properties.molecules.core) NumberHDonors (class in gt4sd.properties.molecules.core) NumberHeterocycles (class in gt4sd.properties.molecules.core) NumberLargeRings (class in gt4sd.properties.molecules.core) NumberRings (class in gt4sd.properties.molecules.core) NumberRotatableBonds (class in gt4sd.properties.molecules.core) NumberStereocenters (class in gt4sd.properties.molecules.core)

O

Objective (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core) offspring_size (GraphGAGenerator attribute) optim (CGCNNTrainingArguments attribute) (TransformersTrainingArgumentsCLI attribute) optimize() (GaussianProcessRepresentationsSampler method) optimize_batch_size (SMILESLSTMHCGenerator attribute) (SMILESLSTMPPOGenerator attribute) optimize_n_epochs (SMILESLSTMHCGenerator attribute) optimizer (PaccMannTrainingArguments attribute) oracle_name (MoleculeOneParameters attribute) Organ (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_organ) OrganGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) OrganIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation)

OrganTox (class in gt4sd.properties.molecules.core) OrganToxParameters (class in gt4sd.properties.molecules.core) OrganToxParameters.Organs (class in gt4sd.properties.molecules.core) OrganToxParameters.ToxType (class in gt4sd.properties.molecules.core) out_channels (DiffusionModelArguments attribute) (MLPEdgeEncoder property) output (AskcosParameters attribute) output_dir (DiffusionTrainingArguments attribute) (GuacaMolLSTMTrainingArguments attribute) output_path (CGCNNTrainingArguments attribute) (CrystalsRFCTrainingArguments attribute) (TransformersToSentenceTransformersArguments attribute) ovary (OrganToxParameters.Organs attribute) overwrite_output_dir (DiffusionTrainingArguments attribute)

P

p (HuggingFaceConfiguration attribute) PaccMann (class in gt4sd.algorithms.prediction.paccmann.core) PaccMannDataArguments (class in gt4sd.training_pipelines.paccmann.core) PaccMannGP (class in gt4sd.algorithms.controlled_sampling.paccmann_gp.core) PaccMannGPGenerator (class in gt4sd.algorithms.controlled_sampling.paccmann_gp.core) PaccMannRL (class in gt4sd.algorithms.conditional_generation.paccmann_rl.core) PaccMannRLOmicBasedGenerator (class in gt4sd.algorithms.conditional_generation.paccmann_rl.core) PaccMannRLProteinBasedGenerator (class in gt4sd.algorithms.conditional_generation.paccmann_rl.core) PaccMannSavingArguments (class in gt4sd.training_pipelines.paccmann.core) PaccMannTrainingArguments (class in gt4sd.training_pipelines.paccmann.core) PaccMannTrainingPipeline (class in gt4sd.training_pipelines.paccmann.core) PaccMannVAE (class in gt4sd.algorithms.generation.paccmann_vae.core) PaccMannVaeDefaultGenerator (class in gt4sd.algorithms.generation.paccmann_vae.implementation) PaccMannVAEGenerator (class in gt4sd.algorithms.generation.paccmann_vae.core) PaccMannVAEModelArguments (class in gt4sd.training_pipelines.paccmann.vae.core) PaccMannVAETrainingPipeline (class in gt4sd.training_pipelines.paccmann.vae.core) pad_index (PaccMannVAEModelArguments attribute) pancreas (OrganToxParameters.Organs attribute) parameters (MolGXGenerator property) parameters_dict (AlgorithmApplication attribute) parse_arguments_from_config() (in module gt4sd.frameworks.gflownet.arg_parser.parser) (in module gt4sd.frameworks.granular.arg_parser.parser) parse_json_file() (TrainerArgumentParser method) PartGenerator (class in gt4sd.algorithms.generation.pgt.implementation) patience (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (SMILESGAGenerator attribute) pg_iters (MosesOrganTrainingArguments attribute) PGT (class in gt4sd.algorithms.generation.pgt.core) PGTAlgorithmConfiguration (class in gt4sd.algorithms.generation.pgt.core) PGTCoherenceChecker (class in gt4sd.algorithms.generation.pgt.core) PGTEditor (class in gt4sd.algorithms.generation.pgt.core) PGTGenerator (class in gt4sd.algorithms.generation.pgt.core) ph (AmidePhConfiguration attribute) (PhConfiguration attribute) PhConfiguration (class in gt4sd.properties.proteins.core) pin_memory (PaccMannDataArguments attribute) pituitary_gland (OrganToxParameters.Organs attribute) plausability (AskcosParameters.Output attribute) plm_probability (RegressionTransformerTrainingArguments attribute) Plogp (class in gt4sd.properties.molecules.core) plogp() (in module gt4sd.properties.molecules.functions) point_to_tensor() (in module gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core) PoissonRatio (class in gt4sd.properties.crystals.core) PoissonRatioParameters (class in gt4sd.properties.crystals.core) PolymerBlocks (class in gt4sd.algorithms.generation.polymer_blocks.core) PolymerBlocksGenerator (class in gt4sd.algorithms.generation.polymer_blocks.core) pooling (TransformersToSentenceTransformersArguments attribute) pooling() (CrystalGraphConvNet method) pooling_mode (MolformerModelArguments attribute) population_size (GraphGAGenerator attribute) (GraphMCTSGenerator attribute) (SMILESGAGenerator attribute) position (GranularBaseModel attribute)

PositionalEncoding (class in gt4sd.frameworks.granular.ml.models.module) PositionwiseFeedForward (class in gt4sd.frameworks.granular.ml.models.module) postprocess_output() (GeoDiffPipeline method) predict() (BimodalMCAAffinityPredictor method) (KeyBERT method) (MCAPredictor method) (MlpPredictor method) (PredictorAlgorithm method) (RFC method) (ZeroShotClassifier method) predict_dataloader() (GFlowNetDataModule method) predict_mask_length() (VaeTrans method) predict_reward_model() (SamplingIterator method) predict_reward_task() (SamplingIterator method) predict_values() (BimodalMCAAffinityPredictor method) (MCAPredictor method) prediction_step() (GFlowNetModule method) predictor() (PropertyPredictorScorer method) PredictorAlgorithm (class in gt4sd.algorithms.core) prefix (HuggingFaceConfiguration attribute) prepare_ctrl_input() (in module gt4sd.algorithms.generation.hugging_face.implementation) prepare_data() (GFlowNetDataModule method) prepare_datasets_from_files() (in module gt4sd.training_pipelines.regression_transformer.utils) prepare_prefix_input() (in module gt4sd.algorithms.generation.hugging_face.implementation) prepare_test_data() (GranularDataModule method) prepare_train_data() (GranularDataModule method) pretrained_path (MolformerModelArguments attribute) price (AskcosParameters.Output attribute) PrimarySequenceEncoder (class in gt4sd.domains.materials.protein_encoding) primer_smiles (CatalystGenerator attribute) print_freq (CGCNNTrainingArguments attribute) print_help() (SavingArgumentParser method), [1] (TrainerArgumentParser method) print_info (InferenceArguments attribute) profiler (GFlowNetPytorchLightningTrainingArguments attribute) (GranularPytorchLightningTrainingArguments attribute) prompt (DiffusersConfiguration attribute) (HuggingFaceConfiguration attribute) propagate() (MessagePassing method) properties (DomainSubmodule attribute) Property (class in gt4sd.training_pipelines.regression_transformer.utils) property_collator (ConditionalGenerator attribute) PropertyPredictor (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core) (class in gt4sd.algorithms.core) (class in gt4sd.properties.core) PropertyPredictorParameters (class in gt4sd.properties.core) PropertyPredictorRegistry (class in gt4sd.properties) PropertyPredictorScorer (class in gt4sd.properties.scorer) protein_embedding_encoder (ProteinSequenceConditionalGenerator attribute) protein_embedding_encoder_params (ProteinSequenceConditionalGenerator attribute) protein_targets (AffinityPredictor attribute) ProteinLanguageRT (class in gt4sd.algorithms.conditional_generation.regression_transformer.implementation) ProteinPropertyPredictorScorer (class in gt4sd.properties.scorer) ProteinSequenceConditionalGenerator (class in gt4sd.algorithms.conditional_generation.paccmann_rl.implementation)

Q

q_bidir (MosesVAEModelArguments attribute) q_cell (MosesVAEModelArguments attribute) q_d_h (MosesVAEModelArguments attribute) q_dropout (MolformerModelArguments attribute) (MosesVAEModelArguments attribute)

q_n_layers (MosesVAEModelArguments attribute) Qed (class in gt4sd.properties.molecules.core) qed() (in module gt4sd.properties.molecules.functions) QEDScorer (class in gt4sd.properties.scores.core) QM9Dataset (class in gt4sd.frameworks.gflownet.tests.qm9) QM9GapTask (class in gt4sd.frameworks.gflownet.tests.qm9)

R

random_action_prob (GFlowNetModelArguments attribute) random_start (GraphGAGenerator attribute) (SMILESGAGenerator attribute) (SMILESLSTMHCGenerator attribute) randomize (ReinventGenerator attribute) ratio (GFlowNetDataArguments attribute) rdkit_conformation() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) RDKitDescriptorScorer (class in gt4sd.properties.scores.core) readout (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) real_sph_harm() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) receptor_pdb_file (DockingParameters attribute) register_algorithm_application() (ApplicationsRegistry class method) RegistryDict (class in gt4sd.algorithms.registry) RegressionTransformer (class in gt4sd.algorithms.conditional_generation.regression_transformer.core) RegressionTransformerDataArguments (class in gt4sd.training_pipelines.regression_transformer.core) RegressionTransformerModelArguments (class in gt4sd.training_pipelines.regression_transformer.implementation) RegressionTransformerMolecules (class in gt4sd.algorithms.conditional_generation.regression_transformer.core) RegressionTransformerProteins (class in gt4sd.algorithms.conditional_generation.regression_transformer.core) RegressionTransformerSavingArguments (class in gt4sd.training_pipelines.regression_transformer.core) RegressionTransformerTrainingArguments (class in gt4sd.training_pipelines.regression_transformer.core) RegressionTransformerTrainingPipeline (class in gt4sd.training_pipelines.regression_transformer.implementation) Reinvent (class in gt4sd.algorithms.conditional_generation.reinvent.core) ReinventBase (class in gt4sd.algorithms.conditional_generation.reinvent.reinvent_core.core) ReinventConditionalGenerator (class in gt4sd.algorithms.conditional_generation.reinvent.implementation) ReinventGenerator (class in gt4sd.algorithms.conditional_generation.reinvent.core) remove_bonddir (PaccMannDataArguments attribute) remove_chirality (PaccMannDataArguments attribute) remove_unused_columns (TransformersTrainingArgumentsCLI attribute) RemoveEdge (GraphActionType attribute) RemoveEdgeAttr (GraphActionType attribute) RemoveNode (GraphActionType attribute) RemoveNodeAttr (GraphActionType attribute)

reparameterize() (in module gt4sd.frameworks.torch.vae) repeat_batch() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) repeat_data() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) repetition_penalty (HuggingFaceConfiguration attribute) report_to (TransformersTrainingArgumentsCLI attribute) Representation (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core) Res (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) reset() (AverageMeter method) reset_logging_root_logger() (in module gt4sd.configuration) reset_parameters() (BesselBasisLayer method) (CFConv method) resolution (DiffusionDataArguments attribute) resources_path (ChemicalLanguageRT attribute) (ProteinLanguageRT attribute) restart_path (MolformerModelArguments attribute) results_dir (MolformerModelArguments attribute) resume (CGCNNTrainingArguments attribute) resume() (EMA method) resume_from_checkpoint (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) return_first (AskcosParameters attribute) reward_loss_multiplier (GFlowNetModelArguments attribute) reward_temperature (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) reward_weight (MosesOrganTrainingArguments attribute) RFC (class in gt4sd.frameworks.crystals_rfc.rf_classifier) rnn_cell_size (PaccMannVAEModelArguments attribute) rnn_dropout (GuacaMolLSTMModelArguments attribute) RnnDecoder (class in gt4sd.frameworks.granular.ml.models.module) RnnEncoder (class in gt4sd.frameworks.granular.ml.models.module) rollouts (MosesOrganTrainingArguments attribute) root_dir (MolformerModelArguments attribute) run() (MPModelProxy method) (ReinventBase method)

S

S3Parameters (class in gt4sd.properties.core) S3ParametersCrystals (class in gt4sd.properties.crystals.core) S3ParametersMolecules (class in gt4sd.properties.molecules.core) S3SyncError safely_determine_task() (ConditionalGenerator method) sample (MoleculeGNNOutput attribute) sample() (Generator method), [1], [2], [3] (GeneratorAlgorithm method) (GranularEncoderDecoderModel method) (GraphActionCategorical method) (MolGX method) sample_conditional_information() (GFlowNetTask method) (GraphBuildingEnvContext method) (QM9GapTask method) sample_offline() (SamplingIterator method) sample_online() (SamplingIterator method) sample_sequence() (ConditionalGenerator method) sample_unique_sequences() (ReinventConditionalGenerator method) sample_uniquely (ReinventGenerator attribute) SampledSequencesDTO (class in gt4sd.algorithms.conditional_generation.reinvent.reinvent_core.core) SampledTuple (class in gt4sd.algorithms.conditional_generation.reinvent.implementation) samples_for_evaluation (PaccMannGPGenerator attribute) samples_per_profile (TranscriptomicConditionalGenerator attribute) samples_per_protein (ProteinSequenceConditionalGenerator attribute) sampling_iterator (GFlowNetDataArguments attribute) sampling_model (GFlowNetModelArguments attribute) sampling_tau (GFlowNetModelArguments attribute) sampling_variance (PaccMannGPGenerator attribute) sampling_wrapper (ConditionalGenerator attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) SamplingError SamplingIterator (class in gt4sd.frameworks.gflownet.dataloader.sampler) Sas (class in gt4sd.properties.molecules.core) sas() (in module gt4sd.properties.molecules.functions) satisfies() (PropertyPredictor method) save() (RFC method) save_checkpoint() (in module gt4sd.training_pipelines.cgcnn.core) save_datasets (RegressionTransformerDataArguments attribute) save_dir (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) save_frequency (MosesTrainingArguments attribute) save_images_epochs (DiffusionTrainingArguments attribute) save_interval (PaccMannTrainingArguments attribute) save_json (AskcosParameters attribute) save_last (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) save_model_epochs (DiffusionTrainingArguments attribute) save_strategy (TransformersTrainingArgumentsCLI attribute) save_top_k (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) save_version_from_training_pipeline_arguments() (AlgorithmConfiguration class method) save_version_from_training_pipeline_arguments_postprocess() (AlgorithmConfiguration class method) (PGTAlgorithmConfiguration class method) SavingArgumentParser (class in gt4sd.cli.saving) (class in gt4sd.cli.upload) SavingArguments (class in gt4sd.cli.saving) (class in gt4sd.cli.upload) scaffold (SampledSequencesDTO attribute) (SampledTuple attribute) scaffolds (MoLeRDefaultGenerator attribute) Scaler (class in gt4sd.algorithms.controlled_sampling.advanced_manufacturing.implementation.core) scheduler_type (DDIMGenerator attribute) (DDPMGenerator attribute) (DiffusersConfiguration attribute) (GeoDiffGenerator attribute) (LDMGenerator attribute) (LDMTextToImageGenerator attribute) (ScoreSdeGenerator attribute) (StableDiffusionGenerator attribute) SchNetEncoder (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) score() (CombinedScorer method) (IsomerScorer method) (PropertyPredictorScorer method) (QEDScorer method) (RDKitDescriptorScorer method) (SMARTSScorer method) (TanimotoScorer method) (TargetValueScorer method) score_list() (CombinedScorer method) (PropertyPredictorScorer method) (TargetValueScorer method) score_scale (ScscoreConfiguration attribute) ScoreSdeGenerator (class in gt4sd.algorithms.generation.diffusion.core) Scscore (class in gt4sd.properties.molecules.core) scscore() (in module gt4sd.properties.molecules.functions) ScscoreConfiguration (class in gt4sd.properties.molecules.core) search (ChemicalLanguageRT attribute) (ConditionalGenerator attribute) (ProteinLanguageRT attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) seed (GFlowNetPytorchLightningTrainingArguments attribute) (MoLeRDefaultGenerator attribute) (MolformerModelArguments attribute) (MosesTrainingArguments attribute) (PaccMannGPGenerator attribute) seed_smiles (MoLeRDefaultGenerator attribute) selfies (MoleculeFormat attribute) (PaccMannDataArguments attribute)

selfies_alphabet() (in module gt4sd.frameworks.granular.tokenizer.tokenizer) selfies_conditional_generator (ConditionalGenerator attribute) selfies_conditional_generator_params (ConditionalGenerator attribute) SelfiesTokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) set_bounds() (GaussianProcessRepresentationsSampler method) set_indexes() (GFlowNetDataset method) set_rdmol_positions() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) set_rdmol_positions_() (in module gt4sd.algorithms.generation.diffusion.geodiff.model.utils) set_seed() (GPConditionalGenerator method) (in module gt4sd.algorithms.generation.diffusion.implementation) (in module gt4sd.algorithms.generation.hugging_face.implementation) (SamplingIterator method) SetEdgeAttr (GraphActionType attribute) SetNodeAttr (GraphActionType attribute) setup() (GFlowNetDataModule method) (GranularDataModule method) setup_dataset() (RegressionTransformerTrainingPipeline method) setup_model() (RegressionTransformerTrainingPipeline method) sharded_ddp (TransformersTrainingArgumentsCLI attribute) ShearModuli (class in gt4sd.properties.crystals.core) ShearModuliParameters (class in gt4sd.properties.crystals.core) ShiftedSoftplus (class in gt4sd.algorithms.generation.diffusion.geodiff.model.layers) short_cut (TorchDrugGCPNModelArguments attribute) (TorchDrugGraphAFModelArguments attribute) Sider (class in gt4sd.properties.molecules.core) SiderParameters (class in gt4sd.properties.molecules.core) sigma (MoLeRDefaultGenerator attribute) SiLU (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) silu() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) similarity_to_seed() (in module gt4sd.properties.molecules.functions) SimilaritySeed (class in gt4sd.properties.molecules.core) SimilaritySeedParameters (class in gt4sd.properties.molecules.core) site (OrganToxParameters attribute) SMARTSScorer (class in gt4sd.properties.scores.core) smiles (MoleculeFormat attribute) (SimilaritySeedParameters attribute) smiles_field (TorchDrugDataArguments attribute) smiles_language (ConditionalGenerator attribute) smiles_language_filepath (PaccMannDataArguments attribute) smiles_to_ids() (SmilesTokenizationPreProcessingDataset method) smiles_to_latent() (CatalystVAE method) smiles_to_selfies() (BasicSelfiesTokenizer method) SMILESGA (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_ga) SMILESGAGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) SMILESGAIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) SMILESLSTMHC (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_lstm_hc) SMILESLSTMHCGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) SMILESLSTMHCIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) SMILESLSTMPPO (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.smiles_lstm_ppo) SMILESLSTMPPOGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) SMILESLSTMPPOIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) SmilesTokenizationPreProcessingDataset (class in gt4sd.frameworks.granular.dataloader.dataset) SmilesTokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) solver (Generator attribute) source_version (SavingArguments attribute), [1] sph_harm_prefactor() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) spherical_bessel_formulas() (in module gt4sd.frameworks.gflownet.ml.models.mxmnet) SphericalBasisLayer (class in gt4sd.frameworks.gflownet.ml.models.mxmnet) spleen (OrganToxParameters.Organs attribute) split_data() (RFC method) StableDiffusionGenerator (class in gt4sd.algorithms.generation.diffusion.core) stack_depth (PaccMannVAEModelArguments attribute) stack_width (PaccMannVAEModelArguments attribute) start_epoch (CGCNNTrainingArguments attribute) state_dict() (AtomInitializer method) (Normalizer method) step() (GranularBaseModel method) (GraphBuildingEnv method) (MlpAutoEncoder method) (MlpPredictor method) (NoEncoding method) (VaeMlp method) (VaeRnn method) (VaeTrans method) stomach (OrganToxParameters.Organs attribute) Stop (GraphActionType attribute) stop_token (HuggingFaceConfiguration attribute) stop_words (KeyBERTGenerator attribute) str2bool() (in module gt4sd.frameworks.gflownet.arg_parser.utils) (in module gt4sd.frameworks.granular.arg_parser.utils) strategy (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) stratified_batch_file (GFlowNetDataArguments attribute) (GranularDataArguments attribute) stratified_value_name (GFlowNetDataArguments attribute) (GranularDataArguments attribute) StratifiedSampler (class in gt4sd.frameworks.granular.dataloader.sampler) subchronic (OrganToxParameters.ToxType attribute) SublayerConnection (class in gt4sd.frameworks.granular.ml.models.module) subs_format (ChemicalLanguageRT attribute) (ConditionalGenerator attribute) (ProteinLanguageRT attribute) subsequent_mask() (in module gt4sd.frameworks.granular.ml.models.module) sym (CrystalsRFCModelArguments attribute) sync_algorithm_with_s3() (in module gt4sd.configuration) sync_folder() (GT4SDS3Client method) sync_folder_with_s3() (in module gt4sd.s3) synthesizability (AskcosParameters.Output attribute)

T

TanimotoScorer (class in gt4sd.properties.scores.core) target (ActivityAgainstTargetParameters attribute) (DockingTdcParameters attribute) (GeneratorAlgorithm attribute) (InferenceArguments attribute) target_field (TorchDrugDataArguments attribute) target_to_minimization_function() (GPConditionalGenerator method) target_version (SavingArguments attribute), [1] TargetValueScorer (class in gt4sd.properties.scores.core) task (CGCNNTrainingArguments attribute) (ConditionalGenerator attribute) (GAFGenerator attribute) (GCPNGenerator attribute) (Generator attribute) (GFlowNetModelArguments attribute) (PGTGenerator attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) tb_epsilon (GFlowNetModelArguments attribute) TDLoss (class in gt4sd.frameworks.gflownet.loss.td_loss) temperature (ChemicalLanguageRT attribute) (ConditionalGenerator attribute) (HuggingFaceConfiguration attribute) (PaccMannGPGenerator attribute) (PaccMannRLOmicBasedGenerator attribute) (PaccMannRLProteinBasedGenerator attribute) (PaccMannVAEGenerator attribute) (PaccMannVAEModelArguments attribute) (ProteinLanguageRT attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) (TemplateGenerator attribute) temperature_dist_params (GFlowNetModelArguments attribute) temperature_sample_dist (GFlowNetModelArguments attribute) Template (class in gt4sd.algorithms.conditional_generation.template.core) template_count (AskcosParameters attribute) TemplateGenerator (class in gt4sd.algorithms.conditional_generation.template.core) testes (OrganToxParameters.Organs attribute) tf32 (TransformersTrainingArgumentsCLI attribute) thermometer() (in module gt4sd.frameworks.gflownet.tests.qm9) thymus (OrganToxParameters.Organs attribute) thyroid_gland (OrganToxParameters.Organs attribute) timeout() (GeneratorAlgorithm method) to() (GeoDiffPipeline method) (GraphActionCategorical method) to_dict() (AlgorithmConfiguration method) to_mol() (in module gt4sd.properties.utils) to_smiles() (in module gt4sd.properties.utils) tokenize() (BasicSelfiesTokenizer method) (BasicSmilesTokenizer method) (BasicTokenizer method) (Tokenizer method) Tokenizer (class in gt4sd.frameworks.granular.tokenizer.tokenizer) tokenizer_name (RegressionTransformerModelArguments attribute) tolerance (ChemicalLanguageRT attribute) (ProteinLanguageRT attribute) (RegressionTransformerMolecules attribute) (RegressionTransformerProteins attribute) top_k (PGTAlgorithmConfiguration attribute) top_n (KeyBERTGenerator attribute) top_p (PGTAlgorithmConfiguration attribute) top_tokens (PaccMannVAEModelArguments attribute) TopicsPredictor (class in gt4sd.algorithms.prediction.topics_zero_shot.core) TopicsZeroShot (class in gt4sd.algorithms.prediction.topics_zero_shot.core) TorchDrugDataArguments (class in gt4sd.training_pipelines.torchdrug.core) TorchDrugDataset (class in gt4sd.training_pipelines.torchdrug.dataset) TorchDrugGCPN (class in gt4sd.algorithms.generation.torchdrug.core) TorchDrugGCPNModelArguments (class in gt4sd.training_pipelines.torchdrug.gcpn.core) TorchDrugGCPNTrainingPipeline (class in gt4sd.training_pipelines.torchdrug.gcpn.core) TorchDrugGenerator (class in gt4sd.algorithms.generation.torchdrug.core) TorchDrugGraphAF (class in gt4sd.algorithms.generation.torchdrug.core) TorchDrugGraphAFModelArguments (class in gt4sd.training_pipelines.torchdrug.graphaf.core) TorchDrugGraphAFTrainingPipeline (class in gt4sd.training_pipelines.torchdrug.graphaf.core)

TorchDrugSavingArguments (class in gt4sd.training_pipelines.torchdrug.core) TorchDrugTrainingArguments (class in gt4sd.training_pipelines.torchdrug.core) TorchDrugTrainingPipeline (class in gt4sd.training_pipelines.torchdrug.core) TorchLayerNorm (class in gt4sd.frameworks.granular.ml.models.module) Tox21 (class in gt4sd.properties.molecules.core) Tox21Parameters (class in gt4sd.properties.molecules.core) toxicity_type (OrganToxParameters attribute) Tpsa (class in gt4sd.properties.molecules.core) tpsa() (in module gt4sd.properties.molecules.functions) train() (CGCNNTrainingPipeline method) (CrystalsRFCTrainingPipeline method) (DiffusionForVisionTrainingPipeline method) (GFlowNetTrainingPipeline method) (GuacaMolBaselinesTrainingPipeline method) (GuacaMolLSTMTrainingPipeline method) (in module gt4sd.training_pipelines.cgcnn.core) (MosesOrganTrainingPipeline method) (MosesTrainingPipeline method) (MosesVAETrainingPipeline method) (PaccMannTrainingPipeline method) (PaccMannVAETrainingPipeline method) (PrimarySequenceEncoder method) (RegressionTransformerTrainingPipeline method) (RFC method) (TorchDrugGCPNTrainingPipeline method) (TorchDrugGraphAFTrainingPipeline method) (TorchDrugTrainingPipeline method) (TrainingPipeline method) train_batch_size (DiffusionDataArguments attribute) train_data_dir (DiffusionDataArguments attribute) train_data_path (RegressionTransformerDataArguments attribute) train_dataloader() (GFlowNetDataModule method) (GranularDataModule method) train_dataset_length (MolformerDataArguments attribute) train_epoch_end() (GFlowNetModule method) train_gflownet() (in module gt4sd.frameworks.gflownet.train.core) train_gflownet_main() (in module gt4sd.frameworks.gflownet.train.core) train_granular() (in module gt4sd.frameworks.granular.train.core) train_granular_main() (in module gt4sd.frameworks.granular.train.core) train_load (MolformerDataArguments attribute) (MosesDataArguments attribute) train_size (CGCNNDataArguments attribute) train_smiles_filepath (GuacaMolDataArguments attribute) (PaccMannDataArguments attribute) trainer_log_every_n_steps (GFlowNetPytorchLightningTrainingArguments attribute) TrainerArgumentParser (class in gt4sd.cli.trainer) TrainerArguments (class in gt4sd.cli.trainer) training_name (DiffusionModelArguments attribute) (PaccMannSavingArguments attribute) (PaccMannTrainingArguments attribute) (RegressionTransformerTrainingArguments attribute) (TorchDrugSavingArguments attribute) (TorchDrugTrainingArguments attribute) training_pipeline_name (SavingArguments attribute), [1] (TrainerArguments attribute) training_pipeline_name_to_metadata() (in module gt4sd.training_pipelines) training_step() (GFlowNetModule method) (GranularModule method) training_step_end() (GFlowNetModule method) TrainingPipeline (class in gt4sd.training_pipelines.core) TrainingPipelineArguments (class in gt4sd.training_pipelines.core) TrajectoryBalance (class in gt4sd.frameworks.gflownet.loss.trajectory_balance) TrajectoryBalanceModel (class in gt4sd.frameworks.gflownet.loss.trajectory_balance) transcriptomic_encoder (TranscriptomicConditionalGenerator attribute) transcriptomic_encoder_params (TranscriptomicConditionalGenerator attribute) TranscriptomicConditionalGenerator (class in gt4sd.algorithms.conditional_generation.paccmann_rl.implementation) transform (TorchDrugDataArguments attribute) TransformerDecoder (class in gt4sd.frameworks.granular.ml.models.module) TransformerDecoderLayer (class in gt4sd.frameworks.granular.ml.models.module) TransformerEncoder (class in gt4sd.frameworks.granular.ml.models.module) TransformerEncoderLayer (class in gt4sd.frameworks.granular.ml.models.module) TransformersToSentenceTransformersArguments (class in gt4sd.cli.hf_to_st_converter) TransformersTrainingArgumentsCLI (class in gt4sd.training_pipelines.regression_transformer.utils) type (MolformerModelArguments attribute)

U

update() (AverageMeter method) (Global_MP method) (MessagePassing method) (Property method) upload_file() (GT4SDS3Client method) upload_file_to_s3() (in module gt4sd.s3) upload_to_s3() (in module gt4sd.configuration) upload_version_from_training_pipeline_arguments() (AlgorithmConfiguration class method) upload_version_from_training_pipeline_arguments_postprocess() (AlgorithmConfiguration class method) urinary_bladder (OrganToxParameters.Organs attribute)

use_auth_token (DiffusionTrainingArguments attribute) use_ema (DiffusionTrainingArguments attribute) use_fragment_const (MolGXGenerator property) (MolGXQM9Generator attribute) use_linear_model (MolGXGenerator property) (MolGXQM9Generator attribute) use_maxsum (KeyBERTGenerator attribute) use_mmr (KeyBERTGenerator attribute) use_specific_rings (MolGXGenerator property) (MolGXQM9Generator attribute) uterus (OrganToxParameters.Organs attribute)

V

VAE (class in gt4sd.algorithms.conditional_generation.guacamol.implementation.moses_vae) VaeGenerator (class in gt4sd.algorithms.conditional_generation.guacamol.core) VaeIterator (class in gt4sd.algorithms.conditional_generation.guacamol.implementation) VaeMlp (class in gt4sd.frameworks.granular.ml.models.vae_mlp.core) VaeRnn (class in gt4sd.frameworks.granular.ml.models.vae_rnn.core) VaeTrans (class in gt4sd.frameworks.granular.ml.models.vae_trans.core) val_check_interval (GFlowNetPytorchLightningTrainingArguments attribute) (MolformerTrainingArguments attribute) val_dataloader() (GFlowNetDataModule method) (GranularDataModule method) val_load (MosesDataArguments attribute) val_size (CGCNNDataArguments attribute) val_step() (GranularBaseModel method) (MlpAutoEncoder method) (MlpPredictor method) (NoEncoding method) (VaeMlp method) (VaeRnn method) (VaeTrans method) valid_every (GuacaMolLSTMTrainingArguments attribute) validate() (in module gt4sd.training_pipelines.cgcnn.core) validate_api_token() (in module gt4sd.properties.utils) validate_configuration() (DiffusersGenerationAlgorithm method) (GeneratorAlgorithm method) (HuggingFaceGenerationAlgorithm method) (MoLeR method) (MolGX method) (PaccMannGP method) (PaccMannRL method) (PGT method) (PolymerBlocks method) (RegressionTransformer method) (Template method) (TorchDrugGenerator method) validate_copolymer() (in module gt4sd.domains.materials) validate_every (GFlowNetPytorchLightningTrainingArguments attribute) validate_input() (ConditionalGenerator method) (PropertyPredictorScorer method)

validate_input_molecule() (ChemicalLanguageRT method) (ConditionalGenerator method) (ProteinLanguageRT method) validate_input_numerical() (ConditionalGenerator method) validate_ip() (in module gt4sd.properties.utils) validate_item() (AlgorithmConfiguration method) (GuacaMolAbstractGenerator method) (MoLeRDefaultGenerator method) (MolGXQM9Generator method) (PaccMannGPGenerator method) (PaccMannRLOmicBasedGenerator method) (PaccMannRLProteinBasedGenerator method) (PolymerBlocksGenerator method) (RegressionTransformerMolecules method) (RegressionTransformerProteins method) (ReinventGenerator method) validate_molecules() (ConditionalGenerator static method) (in module gt4sd.domains.materials) validate_numerical() (ConditionalGenerator method) validate_output() (ChemicalLanguageRT method) (ProteinLanguageRT method) validate_sampling_wrapper() (ConditionalGenerator method) validate_selfies() (in module gt4sd.domains.materials) validate_smiles() (in module gt4sd.domains.materials) validate_substructures() (ConditionalGenerator method) validation_indices_file (GFlowNetDataArguments attribute) (GranularDataArguments attribute) validation_split (GFlowNetDataArguments attribute) (GranularDataArguments attribute) validation_step() (GFlowNetModule method) (GranularModule method) verbose (TorchDrugDataArguments attribute) visualize_2d_input() (GeoDiffPipeline method) visualize_3d() (GeoDiffPipeline method) vocab_list (Tokenizer property) vocab_path (MosesSavingArguments attribute) vocab_save (MosesTrainingArguments attribute) vocab_size (PaccMannVAEModelArguments attribute) (Tokenizer property)

W

warm_start (MosesVAETrainingArguments attribute) weight_decay (CGCNNTrainingArguments attribute) (GFlowNetModelArguments attribute) with_hydrogen (TorchDrugDataArguments attribute) without_estimate (MolGXGenerator property) (MolGXQM9Generator attribute)

workers (CGCNNParameters attribute) (CGCNNTrainingArguments attribute) (MolformerParameters attribute) wrap_model_mp() (in module gt4sd.frameworks.gflownet.util)

Z

z_dimension (Representation attribute), [1] z_index (Representation attribute), [1]

z_lr_decay (GFlowNetModelArguments attribute) ZeroShotClassifier (class in gt4sd.algorithms.prediction.topics_zero_shot.implementation)